Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_P18
         (948 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    29   0.96 
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    27   5.1  
SPBC28F2.08c |||HRD ubiquitin ligase complex subunit |Schizosacc...    26   6.7  
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    26   8.9  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    26   8.9  

>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 29.1 bits (62), Expect = 0.96
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
 Frame = +3

Query: 573 TPSMYGATTNDIYSDAGPGSSLDLDTNRPVFSEDTY---RPDNEGPGXNLXEPFQHVR 737
           TP+    T N+ Y+ A P  S   D    VFS+ ++   R    G   NL   F+  R
Sbjct: 469 TPTASSTTANNAYASAEPHPSAFPDDMNSVFSDSSFERERDSGRGRSTNLFSKFKSGR 526


>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 17/68 (25%), Positives = 28/68 (41%)
 Frame = +3

Query: 642 LDTNRPVFSEDTYRPDNEGPGXNLXEPFQHVRRSYDDLRRQTEDSTSXXAGSYRLDPNAG 821
           L   +P+   +++ P           P    RR +   R+Q + STS    S  L+ +  
Sbjct: 571 LARRKPLPDTESHSPSPSATSSIKKNPSSIFRR-FSSRRKQNKSSTSTLQISAPLETSQS 629

Query: 822 PPVIKTXP 845
           PP  +T P
Sbjct: 630 PPTPRTKP 637


>SPBC28F2.08c |||HRD ubiquitin ligase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 713

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +3

Query: 603 DIYSDAGPGSSLDLDTNRPVFSEDTYRPDNEGPGXNLXEP-FQHVRRSYDDLR 758
           DI S AGP S L  +           +PD +    +L  P  + +  SY+D+R
Sbjct: 611 DILSPAGPDSQLPPEPPTLQVDRTPQQPDPQETSESLPSPNTEEMGESYNDIR 663


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = +1

Query: 289 LNAIKRVSSKDVFPWALC*VWAHLQ--LFKRDI*NQTQDLVHSQR 417
           L+   R+S   + PW+LC ++  +Q  LF +D+  +  D V+ ++
Sbjct: 6   LSLAARLSQCWISPWSLCCLYILMQFFLFTKDLNTKIGDFVNDEQ 50


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +3

Query: 495 LPGSYIGQILRDRKNGKIGGT--SMPVQTPSMYGATTNDI 608
           LP SY   +     N  +  T  S PV TPS Y AT ND+
Sbjct: 99  LPSSYKYLLSNSGANFTLQFTTPSGPVSTPSTYVATYNDL 138


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,735,710
Number of Sequences: 5004
Number of extensions: 78992
Number of successful extensions: 204
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 483319012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)