Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_P18
         (948 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_1067 + 10893720-10894585,10895125-10895348,10895518-108957...    32   0.77 
03_06_0187 + 32209924-32210634                                         29   4.1  
06_01_1011 + 7879283-7879885,7880057-7880962,7881274-7882515           29   7.1  
04_01_0462 + 5976706-5976816,5976845-5976988                           29   7.1  
03_05_0390 - 23738892-23739392                                         29   7.1  

>08_01_1067 +
           10893720-10894585,10895125-10895348,10895518-10895708,
           10896082-10896390
          Length = 529

 Score = 31.9 bits (69), Expect = 0.77
 Identities = 20/68 (29%), Positives = 25/68 (36%)
 Frame = +3

Query: 684 PDNEGPGXNLXEPFQHVRRSYDDLRRQTEDSTSXXAGSYRLDPNAGPPVIKTXPXXSLRP 863
           PD  G    L  PF+   R++D   RQ  D         RL P A PP  +     +   
Sbjct: 31  PDGGGIPTTLDGPFEPATRAFDRALRQGSDDVPLT--DPRLAPRARPPAPEQIALAASSD 88

Query: 864 APKXWDXW 887
           A   W  W
Sbjct: 89  ATSVWVSW 96


>03_06_0187 + 32209924-32210634
          Length = 236

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 24/77 (31%), Positives = 29/77 (37%)
 Frame = +2

Query: 710 PGXTIPARPSFIR*PTSPNRGQYVXXGRILQIGPERGASGHKNXTLPFPPAGTKNXGPME 889
           PG  +P  P     P +P  G  V     L + P  GA+G    TLP PP       P+ 
Sbjct: 161 PGGVVPTIPKVPLPPVNP--GAVVPAVPALPVPPIPGAAGGVVPTLPVPPLPAVPGVPL- 217

Query: 890 *PXFXTN*YPPRPXFXP 940
            P       PP P   P
Sbjct: 218 -PEVPGVPLPPVPSVVP 233


>06_01_1011 + 7879283-7879885,7880057-7880962,7881274-7882515
          Length = 916

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 21/83 (25%), Positives = 31/83 (37%), Gaps = 1/83 (1%)
 Frame = +3

Query: 498 PGSYIGQILRDRKNGKIGGTSMPV-QTPSMYGATTNDIYSDAGPGSSLDLDTNRPVFSED 674
           P  +  Q L +   G + G+     Q  S YG    DI+   G    LDL++    F + 
Sbjct: 6   PHDFFSQSLNEAPTGHMDGSDYGFSQGSSGYGGYGTDIHFGGGGSGGLDLNSQADAFPDF 65

Query: 675 TYRPDNEGPGXNLXEPFQHVRRS 743
                   PG  +  P +   RS
Sbjct: 66  ASYQQILEPGSLVLPPIRAGSRS 88


>04_01_0462 + 5976706-5976816,5976845-5976988
          Length = 84

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = -1

Query: 303 LDCIQLTLSAHLEKTYTAKQERMGLVHRVQEVLDSVD 193
           LD + +  SAHLE T TAK E +  ++   ++L+ +D
Sbjct: 41  LDLLAMITSAHLEPTLTAK-EFLRAINEQSKMLEEID 76


>03_05_0390 - 23738892-23739392
          Length = 166

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +1

Query: 709 TWXNHSSTSVVHTMTYVAKQRTVRXXRQDPTDWTRTRGLRS 831
           TW      ++       ++QR V   R+D T W R RG R+
Sbjct: 18  TWRRWREEAMRRRGLMASRQRRVEARRRDATHWRRGRGRRT 58


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,022,880
Number of Sequences: 37544
Number of extensions: 558860
Number of successful extensions: 1423
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1423
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2729534420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)