Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP19_F_P11
(961 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC15E1.09 |grx2||glutaredoxin Grx2|Schizosaccharomyces pombe|c... 84 3e-17
SPAC4F10.20 |grx1||glutaredoxin Grx1|Schizosaccharomyces pombe|c... 83 4e-17
SPCC1450.06c |grx3||monothiol glutaredoxin Grx3|Schizosaccharomy... 61 2e-10
SPAPB2B4.02 |grx5||monothiol glutaredoxin Grx5|Schizosaccharomyc... 43 6e-05
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c... 34 0.034
SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces... 27 5.2
SPCC1919.02 |||pig-X|Schizosaccharomyces pombe|chr 3|||Manual 26 6.9
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 26 9.1
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr... 26 9.1
>SPAC15E1.09 |grx2||glutaredoxin Grx2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 110
Score = 83.8 bits (198), Expect = 3e-17
Identities = 39/92 (42%), Positives = 56/92 (60%)
Frame = +1
Query: 190 FIKEAISKDKVVVFSKSYCPYCKLAKDVFEKVKQPIKVIELNERDDGNTIQDNLAQLTGF 369
F+++AIS + V VFSKS+CP+CK AK+ K P K EL++ ++G+ IQ L + T
Sbjct: 8 FVEKAISNNPVTVFSKSFCPFCKAAKNTLTKYSAPYKAYELDKIENGSDIQAYLHEKTKQ 67
Query: 370 RTVPQVFINGNCVGGGSDVKALYESGKLEPML 465
TVP +F +GG SD+ L SG L M+
Sbjct: 68 STVPSIFFRNQFIGGNSDLNKLRSSGTLTKMI 99
>SPAC4F10.20 |grx1||glutaredoxin Grx1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 101
Score = 83.4 bits (197), Expect = 4e-17
Identities = 37/94 (39%), Positives = 61/94 (64%)
Frame = +1
Query: 181 IQQFIKEAISKDKVVVFSKSYCPYCKLAKDVFEKVKQPIKVIELNERDDGNTIQDNLAQL 360
++ F+ A++ + VVVF+KSYCPYC + V K +V +++ ++G+ IQ L +
Sbjct: 4 VESFVDSAVADNDVVVFAKSYCPYCHATEKVIADKKIKAQVYQIDLMNNGDEIQSYLLKK 63
Query: 361 TGFRTVPQVFINGNCVGGGSDVKALYESGKLEPM 462
TG RTVP +FI+ VGG SD +AL++ G+L+ +
Sbjct: 64 TGQRTVPNIFIHQKHVGGNSDFQALFKKGELDSL 97
>SPCC1450.06c |grx3||monothiol glutaredoxin Grx3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 166
Score = 61.3 bits (142), Expect = 2e-10
Identities = 27/92 (29%), Positives = 52/92 (56%), Gaps = 3/92 (3%)
Frame = +1
Query: 199 EAISKDKVVVFSKSYCPYCKLAKDVFE---KVKQPIKVIELNERDDGNTIQDNLAQLTGF 369
E ++ V++FS+ CPY AK + ++ P V+E+ + + ++D L+ ++
Sbjct: 61 EVFLENPVIIFSRPGCPYSAAAKKLLTETLRLDPPAVVVEVTDYEHTQELRDWLSSISDI 120
Query: 370 RTVPQVFINGNCVGGGSDVKALYESGKLEPML 465
T+P +F+ G+ +GG V+ALY+ KL+ L
Sbjct: 121 STMPNIFVGGHSIGGSDSVRALYQEEKLQSTL 152
>SPAPB2B4.02 |grx5||monothiol glutaredoxin Grx5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 146
Score = 43.2 bits (97), Expect = 6e-05
Identities = 26/105 (24%), Positives = 57/105 (54%), Gaps = 7/105 (6%)
Frame = +1
Query: 172 SVDIQQFIKEAISKDKVVVFSKS-----YCPYCKLAKDVF--EKVKQPIKVIELNERDDG 330
S +Q +++A+ +D +V+F K C + A + E V K++ N +
Sbjct: 22 STQTRQALEQAVKEDPIVLFMKGTPTRPMCGFSLKAIQILSLENVASD-KLVTYNVLSN- 79
Query: 331 NTIQDNLAQLTGFRTVPQVFINGNCVGGGSDVKALYESGKLEPML 465
+ +++ + + + + T+PQ++ING VGG + ++++SG+L +L
Sbjct: 80 DELREGIKEFSDWPTIPQLYINGEFVGGSDILASMHKSGELHKIL 124
>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 33.9 bits (74), Expect = 0.034
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = +1
Query: 331 NTIQDNLAQLTGFRTVPQVFINGNCVGGGSDVKALYESGKLEPML 465
++++ L + + T PQ++I G VGG V + E+G+L+ ML
Sbjct: 198 DSVRQGLKVFSDWPTFPQLYIKGEFVGGLDIVSEMIENGELQEML 242
>SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 338
Score = 26.6 bits (56), Expect = 5.2
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -1
Query: 559 NLKRK*HFICTPKYKFKYANNNKTI 485
N K HF+C KF+ NN K++
Sbjct: 57 NSKANNHFLCNSPLKFEIFNNEKSV 81
>SPCC1919.02 |||pig-X|Schizosaccharomyces pombe|chr 3|||Manual
Length = 332
Score = 26.2 bits (55), Expect = 6.9
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Frame = +2
Query: 236 NLTVLTAS*QKMFLRK*SNQLKL--LS*MNVMMETPFKIILHN*LVSELYLK 385
N T+ + S K F R+ N + + LS N +ETPF + H+ +VSE +++
Sbjct: 36 NNTIDSLSIAKQF-REIKNNINISHLSRENYWVETPFGKVFHSEVVSEEFMQ 86
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 25.8 bits (54), Expect = 9.1
Identities = 27/121 (22%), Positives = 54/121 (44%), Gaps = 3/121 (2%)
Frame = +1
Query: 58 NDDVIATKK*KPDSYFHLEIQYMGSQSGKITRSSKM-AGSVDIQQFIKEA--ISKDKVVV 228
+D + A + K S + E+ Y+ GK+ + + +I+ F +E +S KVV
Sbjct: 699 SDAISAMQNLKYLSCTNCEMSYVSPNLGKLKHLVHLDLHANNIKIFPEEVWQVSSLKVVN 758
Query: 229 FSKSYCPYCKLAKDVFEKVKQPIKVIELNERDDGNTIQDNLAQLTGFRTVPQVFINGNCV 408
S + KL +K+ + I +++ GN + +Q TV ++++ N +
Sbjct: 759 LSSNILEKIKLPVATSKKLTRTISQLKIMRTLSGNPVSSLSSQEFVMPTVEELYLVDNRL 818
Query: 409 G 411
G
Sbjct: 819 G 819
>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1024
Score = 25.8 bits (54), Expect = 9.1
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +2
Query: 323 MMETPFKIILHN*LVSELYLKSL*MATVWEVALMLKH 433
M T F+ +L + + SE+YLKSL + ++++ H
Sbjct: 626 MFRTIFREVLLDGIASEVYLKSLKKHAISQISVRAHH 662
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,808,759
Number of Sequences: 5004
Number of extensions: 58152
Number of successful extensions: 177
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 491307756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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