Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_P10
         (922 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    35   0.014
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    30   0.53 

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 35.1 bits (77), Expect = 0.014
 Identities = 13/23 (56%), Positives = 13/23 (56%)
 Frame = +3

Query: 750 GGXXPPPPXKXXFXXGXPPPPPP 818
           GG  PPPP       G PPPPPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 29.9 bits (64), Expect = 0.53
 Identities = 13/31 (41%), Positives = 13/31 (41%)
 Frame = +1

Query: 727 PPXXXXGGGGXXPXPQXKXXFXGXXPPPPPP 819
           PP     GG   P P       G  PPPPPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 25.8 bits (54), Expect = 8.6
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = +2

Query: 764 PXPXKKXFFXGXXPPPPPP 820
           P P       G  PPPPPP
Sbjct: 750 PVPPPAPIMGGPPPPPPPP 768


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.9 bits (64), Expect = 0.53
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +3

Query: 750 GGXXPPPPXKXXFXXGXPPPPPP 818
           G   PPPP         PPPPPP
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPPPP 29



 Score = 28.7 bits (61), Expect = 1.2
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +2

Query: 752 GGXPPXPXKKXFFXGXXPPPPPP 820
           G  PP P    F     PPPPPP
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPPPP 29


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,629,625
Number of Sequences: 5004
Number of extensions: 19589
Number of successful extensions: 201
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)