Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_P08
         (898 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031621-2|CAA20934.2| 1000|Caenorhabditis elegans Hypothetical ...    29   6.0  
AF025467-2|AAN65301.1|  505|Caenorhabditis elegans Hypothetical ...    29   6.0  
AF025467-1|AAB71039.2|  528|Caenorhabditis elegans Hypothetical ...    29   6.0  

>AL031621-2|CAA20934.2| 1000|Caenorhabditis elegans Hypothetical
           protein F28H6.4 protein.
          Length = 1000

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 12/51 (23%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = -1

Query: 199 ENLFGTTHWQKLYDIIYTNKKW--FYEFRLHTSLEKQLFFKFNLTLALELF 53
           E + G   WQ+  D+++T + W    +  +   +E  +  K++L   +EL+
Sbjct: 390 EKMTGWIFWQEFLDVVHTKRTWKSLSQHFVENLMENIMGTKYDLKAKMELY 440


>AF025467-2|AAN65301.1|  505|Caenorhabditis elegans Hypothetical
           protein R148.5b protein.
          Length = 505

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 14/41 (34%), Positives = 15/41 (36%)
 Frame = +1

Query: 763 PPXXPPPXXLKXXXPXFFXPGXFXFLKRGPPXXGXPXPPXP 885
           PP  PPP       P  F P     + RG P      PP P
Sbjct: 318 PPFMPPPPHFGMGPPRGFMPPPHPMMFRGGPYPPFFPPPPP 358


>AF025467-1|AAB71039.2|  528|Caenorhabditis elegans Hypothetical
           protein R148.5a protein.
          Length = 528

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 14/41 (34%), Positives = 15/41 (36%)
 Frame = +1

Query: 763 PPXXPPPXXLKXXXPXFFXPGXFXFLKRGPPXXGXPXPPXP 885
           PP  PPP       P  F P     + RG P      PP P
Sbjct: 318 PPFMPPPPHFGMGPPRGFMPPPHPMMFRGGPYPPFFPPPPP 358


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,229,366
Number of Sequences: 27780
Number of extensions: 302589
Number of successful extensions: 501
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)