Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_P06
         (929 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ...    33   0.043
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    28   1.6  
SPBC1198.14c |fbp1|SPBC660.04c|fructose-1,6-bisphosphatase Fbp1 ...    27   3.8  
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa...    27   5.0  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    26   6.6  
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces...    26   8.7  
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    26   8.7  
SPAC5D6.13 ||SPAPJ735.02c|Golgi phosphoprotein 3 family|Schizosa...    26   8.7  

>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 377

 Score = 33.5 bits (73), Expect = 0.043
 Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 3/96 (3%)
 Frame = +1

Query: 370 FCKDY-IRGSCAR-ENCKFIHEKPPRTLLKELFRFCHDYQNKGCYRT-NCKFLHSTVEDE 540
           +C+ Y   G C +   C+F+HE   +T+       C  + N  C +  +C   H      
Sbjct: 208 YCRYYNANGICGKGAACRFVHEPTRKTI-------CPKFLNGRCNKAEDCNLSHEL---- 256

Query: 541 ENFYHTGIFPRDSRNVAVCQAYIHGSCSNKDCKYKH 648
                      D R +  C+ ++ G C+N +C+Y H
Sbjct: 257 -----------DPRRIPACRYFLLGKCNNPNCRYVH 281


>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +1

Query: 481  QNKGCYRTNCKFLHSTVEDEE-NFYHTGIF-PRDSRNVAVCQA 603
            +NK    + C+ LHST  DEE N   + +F P  S   AV QA
Sbjct: 1047 ENKNSLLSLCEGLHSTYTDEELNLLLSNLFHPESSIRSAVLQA 1089


>SPBC1198.14c |fbp1|SPBC660.04c|fructose-1,6-bisphosphatase Fbp1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 347

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +1

Query: 301 MINLLNMDGIMNDDNDKVILASRFCKD-YIRGSCARENCKFIHEKPPRTLL 450
           ++NL+ + GI+N   D+     + C D +I    +   CK I  +    L+
Sbjct: 70  LVNLIGLSGIVNSTGDEQKKLDKICNDIFITAMKSNGCCKLIVSEEEEDLI 120


>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 7/19 (36%), Positives = 15/19 (78%)
 Frame = +2

Query: 206 EYRNNNNNEWISICEKCYK 262
           ++ +NNNN+W S+ + C++
Sbjct: 193 KWDSNNNNDWSSLMKDCFR 211


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1154

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = +1

Query: 592  VCQAYIHGSCSNKDCKYKHPSDLISNEACNEVVTIHNITQPQF 720
            +C+ Y+ GSCS    +++      +NE C  + +I  + +  F
Sbjct: 892  ICEKYLKGSCSR--LEFRKYLQKFNNETCYMICSIERLLKVIF 932


>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 879

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 189 NFLDLMSTETTIIMSGYQYVKNAI 260
           N  +L+ST     + GY+YVK AI
Sbjct: 305 NVFELLSTSLAPSIYGYEYVKQAI 328


>SPBC17D11.05 |tif32||translation initiation factor
           eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 460 FRFCHDYQNKGCYRTNCKFLHSTVEDEENF 549
           F+FC  YQ K  +R  C+ L S + +   F
Sbjct: 184 FQFCLKYQRKTEFRRLCELLRSHLGNASKF 213


>SPAC5D6.13 ||SPAPJ735.02c|Golgi phosphoprotein 3
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = +3

Query: 162 HSSFVLIILNFLDLMSTETTIIMS-GYQ 242
           H+S ++ + +++DLMS ET  +M  GYQ
Sbjct: 142 HTSELMSVTSWIDLMSGETWNVMKIGYQ 169


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,352,358
Number of Sequences: 5004
Number of extensions: 71486
Number of successful extensions: 211
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 471335896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)