Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_P06
         (929 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024809-7|AAF59540.1|  315|Caenorhabditis elegans Hypothetical ...    60   3e-09
Z68297-6|CAE45045.1|  302|Caenorhabditis elegans Hypothetical pr...    46   5e-05
U67957-1|AAB07587.2|  324|Caenorhabditis elegans Hypothetical pr...    42   5e-04
Z74476-2|CAA98962.1|  200|Caenorhabditis elegans Hypothetical pr...    30   2.1  
Z70286-3|CAA94296.1|  298|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z69904-1|CAA93777.1|  420|Caenorhabditis elegans Hypothetical pr...    29   4.7  
U58750-12|AAB00652.2|  266|Caenorhabditis elegans Hypothetical p...    29   4.7  

>AC024809-7|AAF59540.1|  315|Caenorhabditis elegans Hypothetical
           protein Y53G8AR.9 protein.
          Length = 315

 Score = 59.7 bits (138), Expect = 3e-09
 Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
 Frame = +1

Query: 373 CKDYIRGSCAR-ENCKFIHEKPPRTLLKELFRFCHDYQNKGCYRTNCKFLHSTVEDEENF 549
           C+D+++  C R   CKF H      +    + FC DYQN+GC R NC+F+H+  ++ E +
Sbjct: 59  CRDFLKNICNRGSRCKFYHPSEAPPISDHDYNFCIDYQNRGCQRDNCRFVHAPRDEVERY 118

Query: 550 YHT 558
             T
Sbjct: 119 KTT 121



 Score = 31.9 bits (69), Expect = 0.67
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 370 FCKDYIRGSCARENCKFIH 426
           FC DY    C R+NC+F+H
Sbjct: 91  FCIDYQNRGCQRDNCRFVH 109


>Z68297-6|CAE45045.1|  302|Caenorhabditis elegans Hypothetical
           protein F11A10.8 protein.
          Length = 302

 Score = 45.6 bits (103), Expect = 5e-05
 Identities = 33/105 (31%), Positives = 46/105 (43%), Gaps = 11/105 (10%)
 Frame = +1

Query: 373 CKDYIRGSCAR-ENCKFIHEKPPRTLLKELFRFCHDYQNKGCYRTNCKFLHSTVED---- 537
           CK ++RG C + + C+F+HE    T + E F F    +   C    C F H   E     
Sbjct: 82  CKHWLRGLCKKGDQCEFLHEYD-LTKMPECFFFS---KYSACSNRECPFRHIDPETKMKD 137

Query: 538 ----EENFYHTGIFPRDS-RNVAVCQAYIHGSC-SNKDCKYKHPS 654
               +  F   G + +   R  AVC  Y+ G C    DC+Y HPS
Sbjct: 138 CPWYDRGFCRHGPYCKHRHRRRAVCPNYLAGFCLQGPDCQYAHPS 182


>U67957-1|AAB07587.2|  324|Caenorhabditis elegans Hypothetical
           protein K02H8.1 protein.
          Length = 324

 Score = 42.3 bits (95), Expect = 5e-04
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
 Frame = +1

Query: 373 CKDYIRGSCAR--ENCKFIHEKPPRTLLKELFRFCHDYQNKGCYRTN--CKFLH 522
           C++++RG CAR  + CKF H  P   + +     C+D     C R N  CK+LH
Sbjct: 44  CREFLRGQCARSDQECKFAHPPPNVDVQQGRVTACYDSIKGRCTRENPKCKYLH 97



 Score = 30.7 bits (66), Expect = 1.6
 Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 4/31 (12%)
 Frame = +1

Query: 571 RDSR--NVAVCQAYIHGSC--SNKDCKYKHP 651
           +DSR   V VC+ ++ G C  S+++CK+ HP
Sbjct: 34  KDSRWLQVEVCREFLRGQCARSDQECKFAHP 64



 Score = 30.7 bits (66), Expect = 1.6
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = +1

Query: 373 CKDYIRGSCAREN--CKFIHEKPPRTLLKEL 459
           C D I+G C REN  CK++H  PP+ +  +L
Sbjct: 78  CYDSIKGRCTRENPKCKYLH--PPQHIKDQL 106


>Z74476-2|CAA98962.1|  200|Caenorhabditis elegans Hypothetical
           protein W05B10.2 protein.
          Length = 200

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +1

Query: 595 CQAYIHGSCSNKD-CKYKHPSDLISNEACNEV 687
           C+ Y+ G C   D C++ HP    S++A NEV
Sbjct: 139 CKNYLKGKCRFGDKCRFSHPVHNRSSDAVNEV 170


>Z70286-3|CAA94296.1|  298|Caenorhabditis elegans Hypothetical
           protein K08C7.7 protein.
          Length = 298

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +1

Query: 421 IHEKPPRTLLKELFRFCHDYQNKGCYRTNCKFLHSTVEDEEN 546
           I E PP  +L  L  +C++  N       CK LH+ +E+  N
Sbjct: 8   ILELPPELILHVLKNYCYEELND--ITVTCKTLHALIEENRN 47


>Z69904-1|CAA93777.1|  420|Caenorhabditis elegans Hypothetical
           protein ZK20.1 protein.
          Length = 420

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +1

Query: 616 SCSNKDCKYKHPSDLISNEACNEVVTIHNITQPQFRIPLSTTL 744
           SC   +C++    D++S+      + I +      R+PLST+L
Sbjct: 253 SCKTTECRFIEDGDIVSSFFDRPSIRIQSDNTVSLRLPLSTSL 295


>U58750-12|AAB00652.2|  266|Caenorhabditis elegans Hypothetical
           protein F55G1.12 protein.
          Length = 266

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = +1

Query: 523 STVEDEENFYHTGIFPRDSRNVAVCQAYIHGSCSNKDCKYKHPSDLIS 666
           ++V + +++Y+ G +  D    +  Q  ++G C   D +Y  P+D IS
Sbjct: 85  NSVSEVKSYYYDGDYTTDGCLRSCYQDVVNGDCGCMDPRYPMPNDGIS 132


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,350,677
Number of Sequences: 27780
Number of extensions: 396167
Number of successful extensions: 1159
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1094
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1158
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2391724104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)