Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_P05
         (966 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9; ...   185   2e-45
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...   117   5e-25
UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular organi...    87   5e-16
UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ...    64   4e-09
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE...    58   3e-07
UniRef50_UPI00015C640B Cluster: hypothetical protein CKO_pCKO2p0...    55   2e-06
UniRef50_A6NX90 Cluster: Putative uncharacterized protein; n=1; ...    55   2e-06
UniRef50_A7BN23 Cluster: Putative uncharacterized protein; n=1; ...    50   7e-05
UniRef50_UPI00015C63F8 Cluster: hypothetical protein CKO_pCKO3p0...    47   8e-04
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru...    45   0.003
UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h...    44   0.004
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    44   0.006
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob...    40   0.095
UniRef50_Q12GC2 Cluster: Putative uncharacterized protein precur...    34   6.3  
UniRef50_A2SSD8 Cluster: Putative uncharacterized protein; n=1; ...    34   6.3  
UniRef50_Q02779 Cluster: Mitogen-activated protein kinase kinase...    34   6.3  

>UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9;
           root|Rep: Putative uncharacterized protein - Salmonella
           typhimurium
          Length = 127

 Score =  185 bits (450), Expect = 2e-45
 Identities = 89/114 (78%), Positives = 92/114 (80%), Gaps = 1/114 (0%)
 Frame = +2

Query: 488 SKRPGTVKRPRCWRFSIGSAPLXSITKIDAQVRGGETRQDXKDTRRFPLEAPSCALLFRX 667
           SK+  T    R  RFSIGSAPL SITKIDAQVRGGETRQD KDTRRFPLEAPSCALLFR 
Sbjct: 2   SKKQSTGTSQRRCRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRP 61

Query: 668 CRLPDTCPPFSLREAWRFLIAHAVGISVRCRSFAPA-XLCARTPVQPDRCAYPV 826
           CRLPDTCPPFSLREAWRFLIAHAVGISVRCRSFAP+  +C   P  P    YPV
Sbjct: 62  CRLPDTCPPFSLREAWRFLIAHAVGISVRCRSFAPSWAVCTNPPFSPTAAPYPV 115


>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score =  117 bits (281), Expect = 5e-25
 Identities = 70/120 (58%), Positives = 75/120 (62%)
 Frame = +2

Query: 320 RGEAVCVLGALPLPRSLTRCARSFGCGERYQLTQRR*YGYPQNQGITQERTCEQKASKRP 499
           R   +C  G +PLPRSLTR ARSFGCGERY+LT           G   E T  +  SK  
Sbjct: 26  RVSRICDTGDIPLPRSLTRYARSFGCGERYRLTD--------GDGNFLEDT-RKTLSKEE 76

Query: 500 GTVKRPRCWRFSIGSAPLXSITKIDAQVRGGETRQDXKDTRRFPLEAPSCALLFRXCRLP 679
               RPR  RFSIGSAPL SI K DAQ+ GGETRQD KD RRFPL APSCALLF    LP
Sbjct: 77  ---IRPRRSRFSIGSAPLTSIAKSDAQISGGETRQDYKDPRRFPLVAPSCALLFLPFGLP 133


>UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular
           organisms|Rep: Predicted protein - Nematostella
           vectensis
          Length = 97

 Score = 87.4 bits (207), Expect = 5e-16
 Identities = 42/52 (80%), Positives = 44/52 (84%)
 Frame = +2

Query: 506 VKRPRCWRFSIGSAPLXSITKIDAQVRGGETRQDXKDTRRFPLEAPSCALLF 661
           V+ PR  RFSIGSAPL SITK DAQ+ GGETRQD KDTRRFPL APSCALLF
Sbjct: 44  VRGPRQSRFSIGSAPLTSITKSDAQISGGETRQDYKDTRRFPLAAPSCALLF 95


>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
           root|Rep: Putative uncharacterized protein - Escherichia
           coli
          Length = 61

 Score = 64.5 bits (150), Expect = 4e-09
 Identities = 30/38 (78%), Positives = 30/38 (78%)
 Frame = -3

Query: 496 PFAGLLLTCSFLRYPLILWITVLPPLSELIPLAAAERP 383
           P    LLTCSF  YPLILWITVLPPLSEL PLAA ERP
Sbjct: 19  PVLCFLLTCSFRLYPLILWITVLPPLSELTPLAAVERP 56


>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
           Myxococcus xanthus
          Length = 486

 Score = 58.0 bits (134), Expect = 3e-07
 Identities = 32/57 (56%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
 Frame = +2

Query: 296 CINESANARGEAVCVLGALPLPRSLTRCARSFGCGERYQL-TQRR*YGYPQNQGITQ 463
           CI + A AR EAV VL ALPL RS TRC RS GCG      +  R YG PQ QG+ Q
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQGMAQ 322


>UniRef50_UPI00015C640B Cluster: hypothetical protein
           CKO_pCKO2p07168; n=1; Citrobacter koseri ATCC
           BAA-895|Rep: hypothetical protein CKO_pCKO2p07168 -
           Citrobacter koseri ATCC BAA-895
          Length = 99

 Score = 55.2 bits (127), Expect = 2e-06
 Identities = 33/71 (46%), Positives = 41/71 (57%)
 Frame = -3

Query: 841 DSRR*YRISAAVGLNGGSCTQPSWSERPTPN*DTYSVSYEKAPRFPKGERRTGIR*AAGS 662
           DS R  R S A    G     P+WSERP P+ DT SVSYEKAPRFPKG++   +   +G 
Sbjct: 14  DSYRKGRSSRAE--RGVRAYSPAWSERPKPSRDTSSVSYEKAPRFPKGKKAEQV---SGK 68

Query: 661 EQESARGSFQG 629
            Q   R + +G
Sbjct: 69  RQGRNRRAHEG 79



 Score = 51.6 bits (118), Expect = 3e-05
 Identities = 38/90 (42%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
 Frame = -1

Query: 840 TQDDS--TG*AQRSG*TGVRAHSXAGANDLHRTEIPTA*AMRKR-HASRREKGGQVSGKR 670
           TQDDS   G + R+   GVRA+S A +     +   ++ +  K     + +K  QVSGKR
Sbjct: 11  TQDDSYRKGRSSRAE-RGVRAYSPAWSERPKPSRDTSSVSYEKAPRFPKGKKAEQVSGKR 69

Query: 669 QXRNRRAHEGASRGKRLVSLXSCRVSPPLT 580
           Q RNRRAHEGA+  K   SL      PPLT
Sbjct: 70  QGRNRRAHEGAAGEKSPASLSPVGFRPPLT 99


>UniRef50_A6NX90 Cluster: Putative uncharacterized protein; n=1;
           Bacteroides capillosus ATCC 29799|Rep: Putative
           uncharacterized protein - Bacteroides capillosus ATCC
           29799
          Length = 37

 Score = 55.2 bits (127), Expect = 2e-06
 Identities = 25/27 (92%), Positives = 26/27 (96%)
 Frame = +1

Query: 646 VRSPVPXLPLTGYLSAFLPSGSVALSH 726
           +RSPVP LPLTGYLSAFLPSGSVALSH
Sbjct: 1   MRSPVPTLPLTGYLSAFLPSGSVALSH 27


>UniRef50_A7BN23 Cluster: Putative uncharacterized protein; n=1;
           Beggiatoa sp. SS|Rep: Putative uncharacterized protein -
           Beggiatoa sp. SS
          Length = 114

 Score = 50.4 bits (115), Expect = 7e-05
 Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
 Frame = +2

Query: 395 CGERYQLTQRR*YG--YPQNQGITQERTCEQKASKRPGTVKRPRCWRFSIGSAPLXSITK 568
           C  R Q    R  G  +P+N  I  +R   + + + P T        F   S PL +ITK
Sbjct: 22  CCHRQQCLLNRNLGLDHPRNHKIMHQRALIRNSPQTPRTYNYTLSSLFPYNSPPLTTITK 81

Query: 569 IDAQVRGGETRQDXKDTRRFPLEAPSCALLF 661
           I  Q +  +T+ + K T  FPL++PS +LLF
Sbjct: 82  IYPQFKNTQTQHNYKYTTPFPLQSPSYSLLF 112


>UniRef50_UPI00015C63F8 Cluster: hypothetical protein
           CKO_pCKO3p06146; n=1; Citrobacter koseri ATCC
           BAA-895|Rep: hypothetical protein CKO_pCKO3p06146 -
           Citrobacter koseri ATCC BAA-895
          Length = 125

 Score = 46.8 bits (106), Expect = 8e-04
 Identities = 36/87 (41%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
 Frame = +2

Query: 581 VRGGETRQDXK----DTRRFPLEAPSCALLFRXCRLPDTCPPFSLREAWRFLIAHAVGIS 748
           VR GETRQD K         PL A SC+      R+P   PPFSL  +     +   GIS
Sbjct: 23  VRSGETRQDLKIITVSDESLPL-ALSCSNP-AVSRIP--VPPFSLAGSVALSHSSHSGIS 78

Query: 749 VRCRSFAPAXLCART-PVQPDRCAYPV 826
            RCRSFAP+   ++  P  P    YPV
Sbjct: 79  ARCRSFAPSWAVSKNPPFSPTAAPYPV 105


>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
           Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
           (SV40)
          Length = 364

 Score = 45.2 bits (102), Expect = 0.003
 Identities = 19/19 (100%), Positives = 19/19 (100%)
 Frame = +2

Query: 98  DPDMIRYIDEFGQTTTRMQ 154
           DPDMIRYIDEFGQTTTRMQ
Sbjct: 346 DPDMIRYIDEFGQTTTRMQ 364


>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
           Alpha-hemolysin - Aeromonas hydrophila
          Length = 59

 Score = 44.4 bits (100), Expect = 0.004
 Identities = 20/20 (100%), Positives = 20/20 (100%)
 Frame = +1

Query: 415 HSKAVIRLSTESGDNAGKNM 474
           HSKAVIRLSTESGDNAGKNM
Sbjct: 40  HSKAVIRLSTESGDNAGKNM 59


>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 44.0 bits (99), Expect = 0.006
 Identities = 23/41 (56%), Positives = 27/41 (65%)
 Frame = +3

Query: 222 INKLTTTIAFILCFRFRVEVWEVFSALMNRPTRGERRFAYW 344
           +++LT      L  RF V    V +ALMNRPTRGERRFAYW
Sbjct: 1   MSELTHINCVALTARFPVGKPVVPAALMNRPTRGERRFAYW 41


>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
           Enterobacteriaceae|Rep: Lactose operon repressor -
           Escherichia coli (strain K12)
          Length = 360

 Score = 39.9 bits (89), Expect = 0.095
 Identities = 19/24 (79%), Positives = 21/24 (87%)
 Frame = -1

Query: 366 ERGSGRAPNTQTASPRALADSLMQ 295
           +R +  APNTQTASPRALADSLMQ
Sbjct: 325 KRKTTLAPNTQTASPRALADSLMQ 348


>UniRef50_Q12GC2 Cluster: Putative uncharacterized protein
           precursor; n=2; Polaromonas|Rep: Putative
           uncharacterized protein precursor - Polaromonas sp.
           (strain JS666 / ATCC BAA-500)
          Length = 268

 Score = 33.9 bits (74), Expect = 6.3
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
 Frame = -3

Query: 505 GSWPFAGLLLTCSFLRYP---LILWITVLPPLSELIPLAAAERP 383
           G W  +G  L    L++    LI+W+  LPPL++ IP+A+ + P
Sbjct: 158 GVWLSSGNALPWGLLQFGGMGLIVWLACLPPLADEIPMASGDSP 201


>UniRef50_A2SSD8 Cluster: Putative uncharacterized protein; n=1;
           Methanocorpusculum labreanum Z|Rep: Putative
           uncharacterized protein - Methanocorpusculum labreanum
           (strain ATCC 43576 / DSM 4855 / Z)
          Length = 109

 Score = 33.9 bits (74), Expect = 6.3
 Identities = 21/55 (38%), Positives = 28/55 (50%)
 Frame = -3

Query: 256 KMNAIVVVNLFIAAYNGYK*SNSITNFTNKAFFSLHSSCGLSKLINVSYHVWIQL 92
           +MNA V +  FIAA      +  +T +   AFF L S  G    ++VSY VW  L
Sbjct: 27  RMNAWVDLAAFIAAV-----ATCVTGYVLWAFFPLGSGRGAMNFLDVSYQVWYDL 76


>UniRef50_Q02779 Cluster: Mitogen-activated protein kinase kinase
           kinase 10; n=21; Euteleostomi|Rep: Mitogen-activated
           protein kinase kinase kinase 10 - Homo sapiens (Human)
          Length = 954

 Score = 33.9 bits (74), Expect = 6.3
 Identities = 21/68 (30%), Positives = 34/68 (50%)
 Frame = -3

Query: 697 ERRTGIR*AAGSEQESARGSFQGETPGIFXVLSGFATSDLSVDFCDAXQGGGAYGKTPAT 518
           ER  G+    GS+Q S+     G++P    +  GFA+ +   +F +A  GG +   +P +
Sbjct: 574 ERLKGL--GEGSKQWSSSAPNLGKSPKHTPIAPGFASLNEMEEFAEAEDGGSSVPPSPYS 631

Query: 517 RPFYGSWP 494
            P Y S P
Sbjct: 632 TPSYLSVP 639


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 838,704,985
Number of Sequences: 1657284
Number of extensions: 16460028
Number of successful extensions: 41702
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 39775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41680
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 89815291940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)