Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP19_F_P04
(957 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE... 56 1e-06
UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ... 55 3e-06
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ... 53 1e-05
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru... 43 0.013
UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h... 40 0.094
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma... 39 0.22
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob... 38 0.38
UniRef50_A7BYY3 Cluster: Putative uncharacterized protein; n=1; ... 35 2.7
UniRef50_A6DNS7 Cluster: Probable ECF sigma factor; n=1; Lentisp... 33 8.2
UniRef50_Q5CM36 Cluster: Multi-pass transmembrane protein; n=4; ... 33 8.2
>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
Myxococcus xanthus
Length = 486
Score = 56.0 bits (129), Expect = 1e-06
Identities = 31/57 (54%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Frame = +3
Query: 528 CXNESANARGEAVCVLGALPLPRSLTRCARSFGCGERYQL-TQRR*YGYPQNQGITQ 695
C + A AR EAV VL ALPL RS TRC RS GCG + R YG PQ QG+ Q
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQGMAQ 322
>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
root|Rep: Putative uncharacterized protein - Escherichia
coli
Length = 61
Score = 54.8 bits (126), Expect = 3e-06
Identities = 27/38 (71%), Positives = 29/38 (76%), Gaps = 1/38 (2%)
Frame = -2
Query: 725 PLLAFAHSXFLR-YPLILWITVLPPLSELIPLAAAERP 615
P+L F + R YPLILWITVLPPLSEL PLAA ERP
Sbjct: 19 PVLCFLLTCSFRLYPLILWITVLPPLSELTPLAAVERP 56
>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
Escherichia coli|Rep: Putative uncharacterized protein -
Escherichia coli
Length = 147
Score = 52.8 bits (121), Expect = 1e-05
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = +3
Query: 552 RGEAVCVLGALPLPRSLTRCARSFGCGERYQLT 650
R +C G +PLPRSLTR ARSFGCGERY+LT
Sbjct: 26 RVSRICDTGDIPLPRSLTRYARSFGCGERYRLT 58
>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
(SV40)
Length = 364
Score = 42.7 bits (96), Expect = 0.013
Identities = 18/19 (94%), Positives = 18/19 (94%)
Frame = +1
Query: 331 DPDMIRYIDEFGQTTTXMQ 387
DPDMIRYIDEFGQTTT MQ
Sbjct: 346 DPDMIRYIDEFGQTTTRMQ 364
>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
Alpha-hemolysin - Aeromonas hydrophila
Length = 59
Score = 39.9 bits (89), Expect = 0.094
Identities = 18/19 (94%), Positives = 18/19 (94%)
Frame = +2
Query: 647 HSKAVIRLSTESGDNAGXN 703
HSKAVIRLSTESGDNAG N
Sbjct: 40 HSKAVIRLSTESGDNAGKN 58
>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
Magnoliophyta|Rep: Putative reverse transcriptase -
Zingiber officinale (Ginger)
Length = 49
Score = 38.7 bits (86), Expect = 0.22
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = +1
Query: 526 SAXMNRPTRGERRFAYW 576
+A MNRPTRGERRFAYW
Sbjct: 25 AALMNRPTRGERRFAYW 41
>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
Enterobacteriaceae|Rep: Lactose operon repressor -
Escherichia coli (strain K12)
Length = 360
Score = 37.9 bits (84), Expect = 0.38
Identities = 18/24 (75%), Positives = 20/24 (83%)
Frame = -3
Query: 598 ERGSGRAPNTQTASPRALADSXMQ 527
+R + APNTQTASPRALADS MQ
Sbjct: 325 KRKTTLAPNTQTASPRALADSLMQ 348
>UniRef50_A7BYY3 Cluster: Putative uncharacterized protein; n=1;
Beggiatoa sp. PS|Rep: Putative uncharacterized protein -
Beggiatoa sp. PS
Length = 77
Score = 35.1 bits (77), Expect = 2.7
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = +1
Query: 133 NN*FPINFC*FLHSVSYLHICYCILLLW 216
N PIN+C +L SVSYL I + LLW
Sbjct: 7 NRLLPINYCRYLKSVSYLSIAQFLFLLW 34
>UniRef50_A6DNS7 Cluster: Probable ECF sigma factor; n=1;
Lentisphaera araneosa HTCC2155|Rep: Probable ECF sigma
factor - Lentisphaera araneosa HTCC2155
Length = 201
Score = 33.5 bits (73), Expect = 8.2
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +1
Query: 409 EICDAIALFVTIISCNKQVNNNNCIHFMFQVQGEVWEVFSAXMNRPTRGERRFAYW 576
+ DA F+ I N +N+++C + +V +VWE + P RG +F YW
Sbjct: 32 DFSDAYRRFIYIALRNNGLNHHDCEEVVQRVMIKVWEKIARFKYNPGRG--KFRYW 85
>UniRef50_Q5CM36 Cluster: Multi-pass transmembrane protein; n=4;
Apicomplexa|Rep: Multi-pass transmembrane protein -
Cryptosporidium hominis
Length = 317
Score = 33.5 bits (73), Expect = 8.2
Identities = 15/36 (41%), Positives = 24/36 (66%)
Frame = +2
Query: 134 IIDFLLIFVSSYIVLVICTFVIAYFYYGAMQIHVAV 241
+I + F SSYI L++C +++ YF YGA++ V V
Sbjct: 110 LISMIQPFSSSYITLILCRYLL-YFSYGALEPSVQV 144
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 570,306,439
Number of Sequences: 1657284
Number of extensions: 9115240
Number of successful extensions: 21280
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 20688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21272
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 88590537959
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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