Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP19_F_P03
(852 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 123 3e-29
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 61 2e-10
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 46 7e-06
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 38 0.002
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 36 0.007
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 36 0.010
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 28 1.5
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 26 7.8
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 26 7.8
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 123 bits (297), Expect = 3e-29
Identities = 87/221 (39%), Positives = 103/221 (46%), Gaps = 4/221 (1%)
Frame = +2
Query: 185 DEEVAALVVDNGSGMCKAGFAGDDAPRARVPSIVGXARHQGVXVXIGXKDSYVGNEAQNK 364
+EE+AALV+DNGSGMCKAGFAGDDAPRA PSIVG RH G+ V +G KDSYVG+EAQ+K
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Query: 365 K-VS*TSIXHRTXIVLTGIXWKKFGL*P-XK*TXXXPQXXPVWSLRVPLTPRP-XXKNYP 535
+ + IV +K P+ P PL P+ K
Sbjct: 62 RGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMTQ 121
Query: 536 XFFXNXXXPPXFXPSNRVPXXXVPXYPRXFVXXXXXXXXXXXXXXXGXXXPPXHLGFGXX 715
F P + V V G P +
Sbjct: 122 IIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRL-DL 180
Query: 716 PGRXLXKYLMXILTERGYSFTTTXEREIVVTSGE-LCYVAL 835
GR L YLM IL ERGY+F+TT EREIV E LCYVAL
Sbjct: 181 AGRDLTDYLMKILMERGYTFSTTAEREIVRDIKEKLCYVAL 221
Score = 39.5 bits (88), Expect = 6e-04
Identities = 27/95 (28%), Positives = 38/95 (40%), Gaps = 2/95 (2%)
Frame = +1
Query: 409 NWDXLEKIWIITXKMN-XVXPPXKXRLVTEGXLNPKAXXKKL-PXFFXKXXTPXXFXSFK 582
NWD +EKIW T V P L+TE LNPK+ +K+ F P + + +
Sbjct: 78 NWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMTQIIFETFNAPAFYVAIQ 137
Query: 583 XXXXXXXXXXXXXXCWNPXKGVSPTGPLXXGKXLP 687
+ GV+ T P+ G LP
Sbjct: 138 AVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALP 172
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 60.9 bits (141), Expect = 2e-10
Identities = 27/53 (50%), Positives = 35/53 (66%)
Frame = +2
Query: 203 LVVDNGSGMCKAGFAGDDAPRARVPSIVGXARHQGVXVXIGXKDSYVGNEAQN 361
+ +DNGSG KAGFAGDD P+ P+ VG +H+ V KD +VG+EAQN
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQN 64
Score = 27.1 bits (57), Expect = 3.4
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +2
Query: 719 GRXLXKYLMXILTERGYSFTTTXEREIVVTSGE-LCYVA 832
GR + YL L + G+ ++ E+EIV E CYVA
Sbjct: 187 GRDVTDYLQLQLRKSGHELVSSAEKEIVREIKEKCCYVA 225
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 46.0 bits (104), Expect = 7e-06
Identities = 25/58 (43%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Frame = +2
Query: 191 EVAALVVDNGSGMCKAGFAGDDAPRARVPSIVG--XARHQGVXVXIGXKDSYVGNEAQ 358
E A +V+DNG+G K G+A D+ PR + PSIVG R + + KD VG+EA+
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAE 59
Score = 32.3 bits (70), Expect = 0.090
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +2
Query: 719 GRXLXKYLMXILTERGYSFTTTXEREIVVTSGE-LCYVA 832
GR +YL+ +L +GY+F T + E V E LCYV+
Sbjct: 182 GRDATRYLISLLLRKGYAFNRTADFETVREMKEKLCYVS 220
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 37.9 bits (84), Expect = 0.002
Identities = 15/34 (44%), Positives = 24/34 (70%)
Frame = +2
Query: 188 EEVAALVVDNGSGMCKAGFAGDDAPRARVPSIVG 289
+EV+A+V+D GS + GF+G+D P+ +PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 35.9 bits (79), Expect = 0.007
Identities = 19/57 (33%), Positives = 33/57 (57%)
Frame = +2
Query: 188 EEVAALVVDNGSGMCKAGFAGDDAPRARVPSIVGXARHQGVXVXIGXKDSYVGNEAQ 358
EE+ +LV+D GS + G+AG+++P +PS + GV + ++ YV +E Q
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQ 58
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 35.5 bits (78), Expect = 0.010
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Frame = +2
Query: 203 LVVDNGSGMCKAGFAGDDAPRARVPSIVGXARHQGV--XVXIGXKDSYVGNE 352
+++DNG+G K G+AG+DAP P+++ R G + K SY+ ++
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSYMASK 58
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 28.3 bits (60), Expect = 1.5
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 203 LVVDNGSGMCKAGFAGDDAPRARVPSIVGXAR 298
LV+DNGS +AG+ G+ P+ ++V R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 25.8 bits (54), Expect = 7.8
Identities = 16/40 (40%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
Frame = -2
Query: 695 GXGGXXFPXXRGPVGETP--FXGFQQXXGGXPGRXXGGPG 582
G G F G G P F G GG PG GGPG
Sbjct: 227 GGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPG 266
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.8 bits (54), Expect = 7.8
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -2
Query: 230 TYRSHCLLPTRQLLRRTS*ISEI 162
TYR H +PT LL T +SEI
Sbjct: 168 TYRDHDAIPTATLLNPTLDVSEI 190
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,687,201
Number of Sequences: 5004
Number of extensions: 43105
Number of successful extensions: 92
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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