Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_P02
         (933 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038611-6|AAB92039.1|  181|Caenorhabditis elegans Hypothetical ...   115   4e-26
U40800-15|AAA81499.1|  158|Caenorhabditis elegans Hypothetical p...    68   1e-11
Z49125-3|CAB97233.1|  213|Caenorhabditis elegans Hypothetical pr...    41   0.001
U97196-12|AAB52456.2|  564|Caenorhabditis elegans Hypothetical p...    32   0.51 
Z70756-10|CAI46587.1|  228|Caenorhabditis elegans Hypothetical p...    30   2.7  
AC006714-6|AAN84810.2|  339|Caenorhabditis elegans Hypothetical ...    28   8.3  
AC006714-5|AAN84811.1|  224|Caenorhabditis elegans Hypothetical ...    28   8.3  

>AF038611-6|AAB92039.1|  181|Caenorhabditis elegans Hypothetical
           protein E04A4.5 protein.
          Length = 181

 Score =  115 bits (277), Expect = 4e-26
 Identities = 55/108 (50%), Positives = 72/108 (66%)
 Frame = +2

Query: 227 MDEYTREPCPWRILDDSXXXXXXXXXXXXLFHSIKGFRNAPLGFSRKMLGSLAAVKERSP 406
           M+EYTREPCP+RI DD             +F +  G++NA  G  +K++G +  V+ RS 
Sbjct: 1   MEEYTREPCPYRIGDDIGSAFAMGLVGGSIFQAFGGYKNAAKG--KKLVGMMREVRMRST 58

Query: 407 IVGGNFAVWGGMFSTIDCSLVYMRQKEDPWNSIMSGALTGGILAARNG 550
           + G  FA WGGMFSTIDC LV +R+KEDP NSI+SG LTG +LA R+G
Sbjct: 59  LTGVQFAAWGGMFSTIDCCLVAIRKKEDPINSIVSGGLTGALLAIRSG 106


>U40800-15|AAA81499.1|  158|Caenorhabditis elegans Hypothetical
           protein D2096.1 protein.
          Length = 158

 Score = 67.7 bits (158), Expect = 1e-11
 Identities = 31/50 (62%), Positives = 37/50 (74%)
 Frame = +2

Query: 398 RSPIVGGNFAVWGGMFSTIDCSLVYMRQKEDPWNSIMSGALTGGILAARN 547
           RS + G  FA WGG+FSTIDC LV  R+KED  NSI+SG LTG +LA R+
Sbjct: 2   RSTLAGVQFAAWGGLFSTIDCCLVANRKKEDSINSIVSGGLTGALLAIRS 51


>Z49125-3|CAB97233.1|  213|Caenorhabditis elegans Hypothetical
           protein C47G2.3 protein.
          Length = 213

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 21/55 (38%), Positives = 28/55 (50%)
 Frame = +2

Query: 389 VKERSPIVGGNFAVWGGMFSTIDCSLVYMRQKEDPWNSIMSGALTGGILAARNGV 553
           +  R    G NF   G MFS  +C+L  +R K D  N   SG + GG+L  R G+
Sbjct: 136 MSSRMKSYGKNFGSIGLMFSGTECALETIRAKSDWRNGTYSGGIVGGLLGLRAGI 190


>U97196-12|AAB52456.2|  564|Caenorhabditis elegans Hypothetical
           protein B0207.1 protein.
          Length = 564

 Score = 32.3 bits (70), Expect = 0.51
 Identities = 19/77 (24%), Positives = 32/77 (41%)
 Frame = -1

Query: 597 AKRIPPISALPAIAGTPFLAARIPPVRAPLIMEFHGSSFCLMYTSEQSMVENIPPQTAKL 418
           A   P ++++P     P    +IPP   P++ +           +   +   +PP T  L
Sbjct: 26  ANPFPNVNSVPVQNPNP---NQIPPAPRPIVNQIQYPKPTNPVQNPNKLSTGLPPMTMML 82

Query: 417 PPTIGERSFTAAKLPSI 367
           PPT+ E   T  K P +
Sbjct: 83  PPTVQEPLPTPVKTPPL 99


>Z70756-10|CAI46587.1|  228|Caenorhabditis elegans Hypothetical
           protein T06E4.12 protein.
          Length = 228

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -1

Query: 621 MIPMPSIRAKRIPPISALPAIAGTPFLAARIPPVRAPLI 505
           + P P + A  IP  +  P IA  P LAA   P  AP +
Sbjct: 163 LAPRPVLAAPAIPAFAPAPIIAPRPVLAAPAIPAFAPAV 201



 Score = 28.3 bits (60), Expect = 8.3
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -1

Query: 621 MIPMPSIRAKRIPPISALPAIAGTPFLAARIPPVRAP 511
           + P P + A  IP  +  P +A  P LAA   P  AP
Sbjct: 143 LAPRPVLAAPAIPAFAPAPLLAPRPVLAAPAIPAFAP 179


>AC006714-6|AAN84810.2|  339|Caenorhabditis elegans Hypothetical
           protein Y119D3B.12a protein.
          Length = 339

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 289 YNGSDRWWTISFDKRFQKRTTRL 357
           Y  SD+ W + F+KRF +R  R+
Sbjct: 71  YKNSDKKWRMGFEKRFLERIRRI 93


>AC006714-5|AAN84811.1|  224|Caenorhabditis elegans Hypothetical
           protein Y119D3B.12b protein.
          Length = 224

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 289 YNGSDRWWTISFDKRFQKRTTRL 357
           Y  SD+ W + F+KRF +R  R+
Sbjct: 71  YKNSDKKWRMGFEKRFLERIRRI 93


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,549,362
Number of Sequences: 27780
Number of extensions: 403238
Number of successful extensions: 1046
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1045
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2402214122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)