Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_P01
         (863 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330...    33   0.22 
12_02_0299 - 17051570-17052474,17053542-17053755                       32   0.68 
07_01_0483 + 3633010-3633203,3633652-3633957,3634598-3634821,363...    29   6.3  
02_05_0686 - 30900748-30902167,30903442-30904742                       28   8.4  

>08_01_0375 -
           3307206-3307316,3307870-3307965,3308061-3308132,
           3308247-3308315,3308427-3308513,3308753-3308858,
           3309118-3309237,3309327-3309406,3309497-3309878,
           3310746-3310814,3311460-3312202
          Length = 644

 Score = 33.5 bits (73), Expect = 0.22
 Identities = 29/122 (23%), Positives = 31/122 (25%), Gaps = 6/122 (4%)
 Frame = +1

Query: 487 PXPXXXFPXXXPXXXKXXXGXSPREXXFPPXFFXXPPGXSGXPXXP-----XXGXXXPXX 651
           P P    P   P   +   G  P     PP F   PP     P  P       G   P  
Sbjct: 20  PQPPPMNPYGPPPPQQPAYGHMPPPQGAPPPFLAPPPPPPPGPPPPHQPQFNFGPGPPQQ 79

Query: 652 XF-FXPQXXXXXXPPXPPXXGXXXXXPXXXXFXXXXXPXXGXPXXPPXPXXXGGXKXXXG 828
                P       PP PP  G     P          P    P  PP P      +    
Sbjct: 80  QQPPPPPQMYYQPPPPPPPYGVNSSQPPPPPPPPPSPPPSAPPPPPPPPTQPPPREAQLA 139

Query: 829 PP 834
           PP
Sbjct: 140 PP 141



 Score = 29.9 bits (64), Expect = 2.7
 Identities = 16/61 (26%), Positives = 17/61 (27%)
 Frame = +2

Query: 605 PGXPXXPXXXXXXXPXXFFXPXXXXXXXPPPPPXXGXXXXPPXXXFXXXXXXPXXGXPXX 784
           P  P  P       P   F P       PPPPP       PP   +      P    P  
Sbjct: 54  PPPPPPPGPPPPHQPQFNFGPGPPQQQQPPPPPQMYYQPPPPPPPYGVNSSQPPPPPPPP 113

Query: 785 P 787
           P
Sbjct: 114 P 114


>12_02_0299 - 17051570-17052474,17053542-17053755
          Length = 372

 Score = 31.9 bits (69), Expect = 0.68
 Identities = 28/110 (25%), Positives = 29/110 (26%)
 Frame = +3

Query: 465 FXXPPXXTXPXPXXSXXXPXXPXXGXGXFPPGXXFSPXIFXXXXXXXRGXPXSPXXXXXX 644
           F  PP  + P P      P  P      FP      P IF          P  P      
Sbjct: 249 FLTPP--SPPPPAFPFPLPPWPWAPPPAFP--FPHLPPIFSPPSPPPPPPPAFPFPFPQL 304

Query: 645 XXXXFXPPXXXXXXXPXPPPXGXPXXXPPXXXFXXXXXPXXXXXPXXPXP 794
                 PP       P PPP   P   PP   F     P     P  P P
Sbjct: 305 PPLPHFPPLPSFYPSPPPPP---PPPPPPPPSFPWPFPPLAPLFPPYPSP 351


>07_01_0483 +
           3633010-3633203,3633652-3633957,3634598-3634821,
           3635722-3635825,3636528-3636662,3637537-3637705,
           3638074-3638209,3639200-3639338,3640487-3640663,
           3640874-3641041,3641363-3641458,3642217-3642345,
           3642439-3642669
          Length = 735

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 257 RXVTVAGXTLXQWALDLEGNLNXVLPSXPRXQKPXAHIQL 376
           R + VA   L QWA+D + NL  V  S  R +   A +++
Sbjct: 2   RLLRVATCNLNQWAMDFDTNLRNVKESIARAKAAGAAVRV 41


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 14/49 (28%), Positives = 14/49 (28%)
 Frame = +1

Query: 688 PPXPPXXGXXXXXPXXXXFXXXXXPXXGXPXXPPXPXXXGGXKXXXGPP 834
           PP PP  G     P          P  G    PP P   GG       P
Sbjct: 345 PPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPPPPPPKGGASRPPAAP 393


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,613,408
Number of Sequences: 37544
Number of extensions: 283417
Number of successful extensions: 987
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)