Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_O22
         (914 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.07 |acp1||F-actin capping protein alpha subunit|Schizo...    62   1e-10
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    28   1.6  
SPBC609.04 |caf5||spermine family transmembrane transporter Caf5...    28   2.1  
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    27   2.8  
SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dp...    27   3.7  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    27   3.7  
SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|c...    27   4.9  
SPCC16A11.14 |sfh1||RSC complex subunit Sfh1 |Schizosaccharomyce...    27   4.9  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   6.5  
SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory...    26   8.6  
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom...    26   8.6  
SPAC23H4.13c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       26   8.6  

>SPAC12B10.07 |acp1||F-actin capping protein alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 256

 Score = 61.7 bits (143), Expect = 1e-10
 Identities = 48/177 (27%), Positives = 83/177 (46%), Gaps = 3/177 (1%)
 Frame = +2

Query: 65  SPPGEFNEVFNDVRVLLNNDTLLKEGASGAFAQYNKDQLTPVRLEGSELYTLITDHNELG 244
           SPPGE N+V +D+R +  +D   +E        Y++D  + V +   E   +  D N L 
Sbjct: 13  SPPGEVNQVVHDIRDIGLSD---EEAIHEQLKLYHEDYNSSVSISDDEKVIISAD-NRLE 68

Query: 245 GGRFFDPRSKCSFRYDHLRKEASEYEPYEPDRAAEPWRAALDEELTAYVAAHYKHGAS*- 421
           G R++D   + SF  ++   EA   E Y     A      + +++    + HY    +  
Sbjct: 69  GNRYYDQVLQKSFTINYETMEAENVEDYTE---AIKIPDEIVKQIKKVASDHYLSDVTFG 125

Query: 422 VVGRT--VDSGTVQLVACIEXHQFQPKNYWNGRWRSVWSLTVGGPATXLRGTLRVQF 586
           ++ ++  V+S T+ LV+     ++ PKNYWNG WR + +  V       R  +RV +
Sbjct: 126 IIKKSDEVESFTIVLVSS----KYNPKNYWNGSWRCICNYNVSEKKLEGRSHIRVHY 178



 Score = 26.2 bits (55), Expect = 6.5
 Identities = 10/11 (90%), Positives = 10/11 (90%)
 Frame = +1

Query: 583 VHYYEDGNVQL 615
           VHYYEDGNV L
Sbjct: 176 VHYYEDGNVWL 186


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 29/123 (23%), Positives = 61/123 (49%), Gaps = 1/123 (0%)
 Frame = +3

Query: 153  PSLNTTRINSRPYVSKAPSCIHSSPTTTNLVAEGFS-ILAPSVLSGMTIYAKKRPSMNPT 329
            P  ++T +NS   ++ + +   S+P T++ V    + I + SVL+  T  A     +N +
Sbjct: 3407 PITSSTVVNSSTPITSSTALNTSTPITSSTVVNSSTPITSSSVLNSSTAIASS-SILNSS 3465

Query: 330  SPIERLSLGGRHLMRS*RRTWLHTTSMVLVKWWVAQSTLVRYSWSPVSXITSFNPRTIGT 509
            +PI   S     ++ S   T + +++++     +  S+++ Y+ S VS + S N   + +
Sbjct: 3466 TPITSSS-----VLNS--STPISSSTVITSSVVIGSSSVLSYASSIVSSV-SLNSSLLSS 3517

Query: 510  VGG 518
             GG
Sbjct: 3518 SGG 3520


>SPBC609.04 |caf5||spermine family transmembrane transporter
           Caf5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
 Frame = -2

Query: 469 TGDQLYRTRVDCATHHLTSTMLVVCSHVRR*LLIKCRPPRLSRS--IGLVGFILGRFF 302
           TG++ YRT  + A+ HL+   L   + +R  +L    P  LS +  IGL+  IL  +F
Sbjct: 281 TGNENYRTEAELASSHLSVAQLAKETIIRPIILSISEPIVLSLNIYIGLIYSILYLWF 338


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 420 KWWVAQSTLVRYSWSP 467
           KWWV     VR+ WSP
Sbjct: 412 KWWVPYLEYVRFMWSP 427


>SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dpb2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 594

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +2

Query: 80  FNEVFNDVRVLLNNDTLLKEGASGAFAQYNKDQLTPVR 193
           FN V++ +   L N++      SG+F+Q    QLTP+R
Sbjct: 183 FNVVYSRI---LRNESFQTPSFSGSFSQTGTYQLTPIR 217


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 18/61 (29%), Positives = 28/61 (45%)
 Frame = +3

Query: 153  PSLNTTRINSRPYVSKAPSCIHSSPTTTNLVAEGFSILAPSVLSGMTIYAKKRPSMNPTS 332
            PS  +    S  Y   +PS   +SP+ +   +  +S  +PS       Y+   PS +PTS
Sbjct: 1573 PSSPSYSPTSPSYSPTSPSYSPTSPSYSP-TSPSYSATSPSYSPTSPSYSPTSPSYSPTS 1631

Query: 333  P 335
            P
Sbjct: 1632 P 1632



 Score = 26.2 bits (55), Expect = 6.5
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +3

Query: 180  SRPYVSKAPSCIHSSPTTTNLVAEGFSILAPSVLSGMTIYAKKRPSMNPTSP 335
            S  Y + +PS   +SP+ +   +  +S  +PS       Y+   PS +PTSP
Sbjct: 1603 SPSYSATSPSYSPTSPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1653



 Score = 25.8 bits (54), Expect = 8.6
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +3

Query: 180  SRPYVSKAPSCIHSSPTTTNLVAEGFSILAPSVLSGMTIYAKKRPSMNPTSP 335
            S  Y   +PS   +SP+ +   +  +S  +PS       Y+   PS +PTSP
Sbjct: 1589 SPSYSPTSPSYSPTSPSYS-ATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1639



 Score = 25.8 bits (54), Expect = 8.6
 Identities = 19/61 (31%), Positives = 29/61 (47%)
 Frame = +3

Query: 153  PSLNTTRINSRPYVSKAPSCIHSSPTTTNLVAEGFSILAPSVLSGMTIYAKKRPSMNPTS 332
            PS + T   S  Y   +PS   +SP+ +   +  +S  +PS       Y+   PS +PTS
Sbjct: 1604 PSYSAT---SPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1659

Query: 333  P 335
            P
Sbjct: 1660 P 1660


>SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 466

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = -2

Query: 541 DRQRPHRTPPTVPIVLGLKLVXFDTGDQLYRTRVDCATH-HLTSTMLV 401
           D+   +   P +  ++   +     G+ +YRT +   TH  LT+ +L+
Sbjct: 149 DKMNNNIKKPNLEFLMPCTITKLSKGENIYRTHIHTTTHGELTTKLLI 196


>SPCC16A11.14 |sfh1||RSC complex subunit Sfh1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 418

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +2

Query: 299 RKEASEYEPYEPDRAAEPWRAA 364
           R+EAS++  +  D +AE WRAA
Sbjct: 317 RREASKFGGFAADVSAERWRAA 338


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 571  SST*LCSRPADRQRPHRTPPTVP 503
            S+  L S PAD   PHR+ P  P
Sbjct: 1541 SAAALSSAPADNSMPHRSSPYAP 1563


>SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory
           factor |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 633

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 59  LHSPPGEFNEVFNDVRVLLNNDTLLKEGASGAFAQYNKDQL 181
           LH  PG  +    ++RV ++  T LK  A  AF  ++  QL
Sbjct: 402 LHEHPGLVDLGSENIRVPIDEATALKSFAKAAFLGHSSAQL 442


>SPCC63.03 |||DNAJ domain protein, DNAJC11
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 642

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = +3

Query: 216 HSSPTTTNLVAE-GFSILAPSVLSGMTIYA 302
           HS P+  NL +E GFS+L P +++  ++YA
Sbjct: 237 HSQPSP-NLSSEIGFSLLRPGLITVKSVYA 265


>SPAC23H4.13c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 184

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 401 SVQPRTPLAPHQVPPAKAQP 342
           +VQ ++PL P + PP KA P
Sbjct: 6   AVQSKSPLLPKENPPVKAFP 25


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,227,725
Number of Sequences: 5004
Number of extensions: 63301
Number of successful extensions: 284
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 274
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)