Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP19_F_O22
(914 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0068 - 13021090-13021197,13021319-13021354,13022245-130223... 68 9e-12
08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,322... 30 2.2
10_08_0586 + 19005991-19006273,19006481-19006642,19006741-190067... 29 5.2
10_08_0085 + 14725531-14726622 29 5.2
03_02_0578 + 9603118-9605633,9605766-9605781 29 5.2
01_07_0346 + 42889121-42890406,42896115-42896118 29 5.2
02_05_0558 - 29950120-29950319,29951213-29951579,29952067-29952372 29 6.8
06_03_0769 + 24448483-24448825,24449228-24449305,24450812-244508... 28 9.0
>07_03_0068 -
13021090-13021197,13021319-13021354,13022245-13022322,
13022412-13022514,13022732-13022817,13023036-13023090,
13023186-13023250,13023997-13024086,13024415-13024530,
13024701-13024710
Length = 248
Score = 68.1 bits (159), Expect = 9e-12
Identities = 46/157 (29%), Positives = 75/157 (47%), Gaps = 10/157 (6%)
Frame = +2
Query: 95 NDVRVLLNNDTLLKEGASGAFAQYNKDQLTPVRLEGSELYTLITDHNELGGGRFFDPRSK 274
+DVR LL ++ + + A+ AF ++NK L + L +IT + EL + DPR+
Sbjct: 3 DDVRALLGDEAVYEAAAAEAFPEHNKAHLVALELPDRSGDIIITTYGELDKNNYLDPRTA 62
Query: 275 CSFRYDHLRKEASEYEPYE----PDRAAEPWRAALDEELTAYVAAHYKHGAS*VVGRTVD 442
DH++++ ++ P P E +R+ALD EL+ YV Y G V R
Sbjct: 63 QVATVDHIKQKCTKLRPAADEELPSAYIEDFRSALDVELSKYVGEAYPKGILIEVSRKFW 122
Query: 443 SGTVQLVAC-IEXHQFQP-----KNYWNGRWRSVWSL 535
+L + H+F ++ NG WRS+W+L
Sbjct: 123 HSYEKLFHIQLLDHRFAHLQLCIESSSNGNWRSIWTL 159
>08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,
3220080-3223195,3223303-3223561,3223665-3223951,
3224029-3224364,3224463-3224604,3224690-3224910,
3224990-3225151,3225242-3225400,3225488-3225787,
3226306-3226569,3227370-3227453
Length = 1855
Score = 30.3 bits (65), Expect = 2.2
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +3
Query: 180 SRPYVSKAPSCIHSSPTTTNLVAEGFSILAPSVLSGMTIYAKKRPSMNPTSP 335
S P S P +SP+ + + +S +PS G Y+ PS +PTSP
Sbjct: 1554 SSPVYSPGPGYSPTSPSYSP-ASPSYSPTSPSYTPGSPTYSPTSPSYSPTSP 1604
>10_08_0586 +
19005991-19006273,19006481-19006642,19006741-19006796,
19006899-19007061,19007753-19007859,19008879-19008945,
19009176-19009375
Length = 345
Score = 29.1 bits (62), Expect = 5.2
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -1
Query: 551 QARRPSKTTPNATDRSNSSWVETGDXRYRRPA 456
Q RRP+ P+ TD S+ S+ D RY+R A
Sbjct: 123 QQRRPASGRPSGTDGSDFSYRMVVDSRYQRVA 154
>10_08_0085 + 14725531-14726622
Length = 363
Score = 29.1 bits (62), Expect = 5.2
Identities = 20/70 (28%), Positives = 31/70 (44%)
Frame = +2
Query: 53 SFLHSPPGEFNEVFNDVRVLLNNDTLLKEGASGAFAQYNKDQLTPVRLEGSELYTLITDH 232
SF+ PP E N F D+ ++ E A +FA + + G+ELY L+ +
Sbjct: 170 SFVSVPPSEMNRHFGDLLETEKGADVVFEVAGESFAAHRCVLAARSPVFGAELYGLMKEG 229
Query: 233 NELGGGRFFD 262
+ G R D
Sbjct: 230 DTAGVVRIED 239
>03_02_0578 + 9603118-9605633,9605766-9605781
Length = 843
Score = 29.1 bits (62), Expect = 5.2
Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Frame = +2
Query: 254 FFDPRSKCSFRYDHLRKEASEYEPYEPDRAAEPWRAALDEELTAYVAAHYKH--GAS*VV 427
+ D R + Y+++ K Y D PW+ L+ + A HY H A ++
Sbjct: 571 YCDERGEMILVYEYMAKGTLRSHLYGSDLPPLPWKQRLEACIGAARGLHYLHTGSAKAII 630
Query: 428 GRTVDSGTVQL 460
R V S + L
Sbjct: 631 HRDVKSANILL 641
>01_07_0346 + 42889121-42890406,42896115-42896118
Length = 429
Score = 29.1 bits (62), Expect = 5.2
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = -1
Query: 551 QARRPSKTTPNATDRSNSSWVETGDXRYRRPAVP 450
+ RR S+ TP AT+ ++SS V R +P+VP
Sbjct: 181 ERRRNSRRTPRATEGASSSRVSPRHGREDQPSVP 214
>02_05_0558 - 29950120-29950319,29951213-29951579,29952067-29952372
Length = 290
Score = 28.7 bits (61), Expect = 6.8
Identities = 22/60 (36%), Positives = 28/60 (46%)
Frame = +2
Query: 257 FDPRSKCSFRYDHLRKEASEYEPYEPDRAAEPWRAALDEELTAYVAAHYKHGAS*VVGRT 436
+DP YD + A +YE YE + A W E +A V +HY A VVGRT
Sbjct: 139 YDPLLDYPINYDIAEQYAYDYERYEAE--ARAWTR---EFSSAPVVSHYPPNA--VVGRT 191
>06_03_0769 +
24448483-24448825,24449228-24449305,24450812-24450855,
24451299-24451362,24451543-24451634,24451988-24452234,
24452632-24452775,24452905-24453011,24453096-24453149,
24453221-24453304,24454448-24454611,24455003-24455147
Length = 521
Score = 28.3 bits (60), Expect = 9.0
Identities = 16/59 (27%), Positives = 31/59 (52%)
Frame = +3
Query: 177 NSRPYVSKAPSCIHSSPTTTNLVAEGFSILAPSVLSGMTIYAKKRPSMNPTSPIERLSL 353
+S+ VS S ++P ++ + L+ + + +Y+++RPS SPI RLS+
Sbjct: 222 SSKDEVSSVSSYNKANPESSLRSSVSMHSLSSRLSTSEPLYSRERPSFPSYSPIPRLSV 280
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,238,241
Number of Sequences: 37544
Number of extensions: 461342
Number of successful extensions: 1684
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1673
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2600672280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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