Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP19_F_O22
(914 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z18853-1|CAA79305.1| 282|Caenorhabditis elegans capping protein... 173 1e-43
Z18805-1|CAA79269.1| 282|Caenorhabditis elegans capping protein... 173 1e-43
U41011-3|AAA82286.1| 282|Caenorhabditis elegans Cap-z protein p... 173 1e-43
Z83103-9|CAI79157.1| 376|Caenorhabditis elegans Hypothetical pr... 30 2.7
Z99281-48|CAE18025.2| 661|Caenorhabditis elegans Hypothetical p... 29 3.5
Z82274-16|CAC70096.1| 1119|Caenorhabditis elegans Hypothetical p... 28 8.1
Z82274-15|CAB05234.2| 1113|Caenorhabditis elegans Hypothetical p... 28 8.1
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 28 8.1
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist... 28 8.1
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele... 28 8.1
AL132951-13|CAC70127.1| 1119|Caenorhabditis elegans Hypothetical... 28 8.1
AL132951-12|CAC44311.1| 1113|Caenorhabditis elegans Hypothetical... 28 8.1
AF283323-1|AAG18575.1| 1113|Caenorhabditis elegans synaptojanin ... 28 8.1
AF283322-1|AAG18574.1| 1119|Caenorhabditis elegans synaptojanin ... 28 8.1
>Z18853-1|CAA79305.1| 282|Caenorhabditis elegans capping protein
alpha subunit protein.
Length = 282
Score = 173 bits (421), Expect = 1e-43
Identities = 86/163 (52%), Positives = 107/163 (65%), Gaps = 2/163 (1%)
Frame = +2
Query: 62 HSPPGEFNEVFNDVRVLLNNDTLLKEGASGAFAQYNKDQLTPVRLEGSELYTLITDHNEL 241
H+PPGEFNEVFN VR+LL ND LLK A AQYN Q PV+L+G TLIT +N+L
Sbjct: 19 HAPPGEFNEVFNSVRMLLENDDLLKNKCVNAIAQYNVGQFVPVKLDGVAKQTLITPYNDL 78
Query: 242 GGGRFFDPRSKCSFRYDHLRKEASEYEPYEPDRA-AEPWRAALDEELTAYVAAHY-KHGA 415
G GRF+D SK SF+YDH+RKEA++ +P+ + E WR AL +L Y+ HY K G
Sbjct: 79 GNGRFYDEVSKKSFKYDHVRKEAADLQPHPAESGITEQWRQALQTQLDIYIDDHYAKSGT 138
Query: 416 S*VVGRTVDSGTVQLVACIEXHQFQPKNYWNGRWRSVWSLTVG 544
V R +G + CIE HQFQPKN+ NGRWRS W++ VG
Sbjct: 139 GVVFAR---NGVFTI--CIESHQFQPKNFCNGRWRSEWNVPVG 176
Score = 31.1 bits (67), Expect = 1.1
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 3/83 (3%)
Frame = +1
Query: 529 VFDGRRACYXVTWNSTCSVHYYEDGNVQLVXXXK*--GSSGG*RXXPHC*KFVXLVSDAK 702
V DG+ + VHYYEDGNVQL + + + + +S+ +
Sbjct: 175 VGDGKSGSQEMKGKILSQVHYYEDGNVQLFSEKEPVLKVNVSADFDKTAKEIIHAISEEE 234
Query: 703 -ILXNCHSNNYXTXXDPTFKXLK 768
I N NY D TFK L+
Sbjct: 235 TIYQNAVQENYANMSDTTFKALR 257
>Z18805-1|CAA79269.1| 282|Caenorhabditis elegans capping protein
alpha subunit protein.
Length = 282
Score = 173 bits (421), Expect = 1e-43
Identities = 86/163 (52%), Positives = 107/163 (65%), Gaps = 2/163 (1%)
Frame = +2
Query: 62 HSPPGEFNEVFNDVRVLLNNDTLLKEGASGAFAQYNKDQLTPVRLEGSELYTLITDHNEL 241
H+PPGEFNEVFN VR+LL ND LLK A AQYN Q PV+L+G TLIT +N+L
Sbjct: 19 HAPPGEFNEVFNSVRMLLENDDLLKNKCVNAIAQYNVGQFVPVKLDGVAKQTLITPYNDL 78
Query: 242 GGGRFFDPRSKCSFRYDHLRKEASEYEPYEPDRA-AEPWRAALDEELTAYVAAHY-KHGA 415
G GRF+D SK SF+YDH+RKEA++ +P+ + E WR AL +L Y+ HY K G
Sbjct: 79 GNGRFYDEVSKKSFKYDHVRKEAADLQPHPAESGITEQWRQALQTQLDIYIDDHYAKSGT 138
Query: 416 S*VVGRTVDSGTVQLVACIEXHQFQPKNYWNGRWRSVWSLTVG 544
V R +G + CIE HQFQPKN+ NGRWRS W++ VG
Sbjct: 139 GVVFAR---NGVFTI--CIESHQFQPKNFCNGRWRSEWNVPVG 176
Score = 31.1 bits (67), Expect = 1.1
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 3/83 (3%)
Frame = +1
Query: 529 VFDGRRACYXVTWNSTCSVHYYEDGNVQLVXXXK*--GSSGG*RXXPHC*KFVXLVSDAK 702
V DG+ + VHYYEDGNVQL + + + + +S+ +
Sbjct: 175 VGDGKSGSQEMKGKILSQVHYYEDGNVQLFSEKEPVLKVNVSADFDKTAKEIIHAISEEE 234
Query: 703 -ILXNCHSNNYXTXXDPTFKXLK 768
I N NY D TFK L+
Sbjct: 235 TIYQNAVQENYANMSDTTFKALR 257
>U41011-3|AAA82286.1| 282|Caenorhabditis elegans Cap-z protein
protein 1 protein.
Length = 282
Score = 173 bits (421), Expect = 1e-43
Identities = 86/163 (52%), Positives = 107/163 (65%), Gaps = 2/163 (1%)
Frame = +2
Query: 62 HSPPGEFNEVFNDVRVLLNNDTLLKEGASGAFAQYNKDQLTPVRLEGSELYTLITDHNEL 241
H+PPGEFNEVFN VR+LL ND LLK A AQYN Q PV+L+G TLIT +N+L
Sbjct: 19 HAPPGEFNEVFNSVRMLLENDDLLKNKCVNAIAQYNVGQFVPVKLDGVAKQTLITPYNDL 78
Query: 242 GGGRFFDPRSKCSFRYDHLRKEASEYEPYEPDRA-AEPWRAALDEELTAYVAAHY-KHGA 415
G GRF+D SK SF+YDH+RKEA++ +P+ + E WR AL +L Y+ HY K G
Sbjct: 79 GNGRFYDEVSKKSFKYDHVRKEAADLQPHPAESGITEQWRQALQTQLDIYIDDHYAKSGT 138
Query: 416 S*VVGRTVDSGTVQLVACIEXHQFQPKNYWNGRWRSVWSLTVG 544
V R +G + CIE HQFQPKN+ NGRWRS W++ VG
Sbjct: 139 GVVFAR---NGVFTI--CIESHQFQPKNFCNGRWRSEWNVPVG 176
Score = 31.1 bits (67), Expect = 1.1
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 3/83 (3%)
Frame = +1
Query: 529 VFDGRRACYXVTWNSTCSVHYYEDGNVQLVXXXK*--GSSGG*RXXPHC*KFVXLVSDAK 702
V DG+ + VHYYEDGNVQL + + + + +S+ +
Sbjct: 175 VGDGKSGSQEMKGKILSQVHYYEDGNVQLFSEKEPVLKVNVSADFDKTAKEIIHAISEEE 234
Query: 703 -ILXNCHSNNYXTXXDPTFKXLK 768
I N NY D TFK L+
Sbjct: 235 TIYQNAVQENYANMSDTTFKALR 257
>Z83103-9|CAI79157.1| 376|Caenorhabditis elegans Hypothetical
protein D1025.10 protein.
Length = 376
Score = 29.9 bits (64), Expect = 2.7
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 305 EASEYEPYEPDRAAEPWRAALDEELT 382
E E EP P+ + WR+ +DEELT
Sbjct: 80 EVPEREPSTPNNSRSNWRSDMDEELT 105
>Z99281-48|CAE18025.2| 661|Caenorhabditis elegans Hypothetical
protein Y57G11C.42 protein.
Length = 661
Score = 29.5 bits (63), Expect = 3.5
Identities = 23/66 (34%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Frame = -1
Query: 533 KTTPNATD-RSNSSWVETGDXRYRRPAVPYQSRLCDPPLN*HHACSVQPRTPLAPHQVPP 357
+TTP+ R S V GD Y P ++ + D P S P PL P Q PP
Sbjct: 196 RTTPDPRIIRPPESLVVIGD--YDEDEPPSENAVVDSPQP--FVTSPPPAQPLFPQQTPP 251
Query: 356 AKAQPL 339
A PL
Sbjct: 252 PPASPL 257
>Z82274-16|CAC70096.1| 1119|Caenorhabditis elegans Hypothetical
protein JC8.10b protein.
Length = 1119
Score = 28.3 bits (60), Expect = 8.1
Identities = 22/68 (32%), Positives = 26/68 (38%)
Frame = -1
Query: 530 TTPNATDRSNSSWVETGDXRYRRPAVPYQSRLCDPPLN*HHACSVQPRTPLAPHQVPPAK 351
T ++ +NSSW E + P P QS P AC P T AP PP
Sbjct: 1028 TRASSASLANSSWYE-----HVPPLAPPQSNNNKSP---PQACLFNPFTQSAPSPAPPPS 1079
Query: 350 AQPLDRAR 327
PL R
Sbjct: 1080 TIPLPPTR 1087
>Z82274-15|CAB05234.2| 1113|Caenorhabditis elegans Hypothetical
protein JC8.10a protein.
Length = 1113
Score = 28.3 bits (60), Expect = 8.1
Identities = 22/68 (32%), Positives = 26/68 (38%)
Frame = -1
Query: 530 TTPNATDRSNSSWVETGDXRYRRPAVPYQSRLCDPPLN*HHACSVQPRTPLAPHQVPPAK 351
T ++ +NSSW E + P P QS P AC P T AP PP
Sbjct: 1022 TRASSASLANSSWYE-----HVPPLAPPQSNNNKSP---PQACLFNPFTQSAPSPAPPPS 1073
Query: 350 AQPLDRAR 327
PL R
Sbjct: 1074 TIPLPPTR 1081
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
K06A9.1b protein.
Length = 2232
Score = 28.3 bits (60), Expect = 8.1
Identities = 37/145 (25%), Positives = 60/145 (41%), Gaps = 8/145 (5%)
Frame = +3
Query: 120 TIPCSRKVLVEPSLNTTRINSRPYVSKAPSCIHSSPTTTNLVAEGFSILAPSVLSGMTIY 299
T+P S + S +++ +S P PS S+PT E ++L+ S +SG T +
Sbjct: 1391 TVPSSTQSFSSTSEGSSKASSSP----VPSQTSSTPTNPTGSTESSTLLS-STISGSTQH 1445
Query: 300 -AKKRPSMNPTSPIERLSLGGRHLMRS*RRTWLHTTS-------MVLVKWWVAQSTLVRY 455
+ S TSP G M S + + T+S M + A ST+
Sbjct: 1446 TTMSKASSGSTSPSTNSQTGSTVTMGSSSTSGVSTSSASSTQPQMSTSQGSSAGSTVASS 1505
Query: 456 SWSPVSXITSFNPRTIGTVGGVRCG 530
+ SP + T+ P + GT+ G
Sbjct: 1506 TASPAASSTA--PSSTGTMSSTSSG 1528
>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
protein 1 protein.
Length = 1852
Score = 28.3 bits (60), Expect = 8.1
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Frame = +3
Query: 120 TIPCSRKVLVEPSLNTTRINSRPYV-SKAPSCIHSSPTTTNL--VAEGFSILAPSVLSGM 290
T P + + V PS + T + P S +P+ SPT+ + + +S +PS
Sbjct: 1599 TSPAAGQSPVSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSS 1658
Query: 291 TIYAKKRPSMNPTSP 335
Y+ PS +P+SP
Sbjct: 1659 PSYSPSSPSYSPSSP 1673
>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
RNA polymeraseII largest subunit (ama-1 IV) gene,
complete cds. ).
Length = 1859
Score = 28.3 bits (60), Expect = 8.1
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Frame = +3
Query: 120 TIPCSRKVLVEPSLNTTRINSRPYV-SKAPSCIHSSPTTTNL--VAEGFSILAPSVLSGM 290
T P + + V PS + T + P S +P+ SPT+ + + +S +PS
Sbjct: 1606 TSPAAGQSPVSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSS 1665
Query: 291 TIYAKKRPSMNPTSP 335
Y+ PS +P+SP
Sbjct: 1666 PSYSPSSPSYSPSSP 1680
>AL132951-13|CAC70127.1| 1119|Caenorhabditis elegans Hypothetical
protein JC8.10b protein.
Length = 1119
Score = 28.3 bits (60), Expect = 8.1
Identities = 22/68 (32%), Positives = 26/68 (38%)
Frame = -1
Query: 530 TTPNATDRSNSSWVETGDXRYRRPAVPYQSRLCDPPLN*HHACSVQPRTPLAPHQVPPAK 351
T ++ +NSSW E + P P QS P AC P T AP PP
Sbjct: 1028 TRASSASLANSSWYE-----HVPPLAPPQSNNNKSP---PQACLFNPFTQSAPSPAPPPS 1079
Query: 350 AQPLDRAR 327
PL R
Sbjct: 1080 TIPLPPTR 1087
>AL132951-12|CAC44311.1| 1113|Caenorhabditis elegans Hypothetical
protein JC8.10a protein.
Length = 1113
Score = 28.3 bits (60), Expect = 8.1
Identities = 22/68 (32%), Positives = 26/68 (38%)
Frame = -1
Query: 530 TTPNATDRSNSSWVETGDXRYRRPAVPYQSRLCDPPLN*HHACSVQPRTPLAPHQVPPAK 351
T ++ +NSSW E + P P QS P AC P T AP PP
Sbjct: 1022 TRASSASLANSSWYE-----HVPPLAPPQSNNNKSP---PQACLFNPFTQSAPSPAPPPS 1073
Query: 350 AQPLDRAR 327
PL R
Sbjct: 1074 TIPLPPTR 1081
>AF283323-1|AAG18575.1| 1113|Caenorhabditis elegans synaptojanin
UNC-26B protein.
Length = 1113
Score = 28.3 bits (60), Expect = 8.1
Identities = 22/68 (32%), Positives = 26/68 (38%)
Frame = -1
Query: 530 TTPNATDRSNSSWVETGDXRYRRPAVPYQSRLCDPPLN*HHACSVQPRTPLAPHQVPPAK 351
T ++ +NSSW E + P P QS P AC P T AP PP
Sbjct: 1022 TRASSASLANSSWYE-----HVPPLAPPQSNNNKSP---PQACLFNPFTQSAPSPAPPPS 1073
Query: 350 AQPLDRAR 327
PL R
Sbjct: 1074 TIPLPPTR 1081
>AF283322-1|AAG18574.1| 1119|Caenorhabditis elegans synaptojanin
UNC-26A protein.
Length = 1119
Score = 28.3 bits (60), Expect = 8.1
Identities = 22/68 (32%), Positives = 26/68 (38%)
Frame = -1
Query: 530 TTPNATDRSNSSWVETGDXRYRRPAVPYQSRLCDPPLN*HHACSVQPRTPLAPHQVPPAK 351
T ++ +NSSW E + P P QS P AC P T AP PP
Sbjct: 1028 TRASSASLANSSWYE-----HVPPLAPPQSNNNKSP---PQACLFNPFTQSAPSPAPPPS 1079
Query: 350 AQPLDRAR 327
PL R
Sbjct: 1080 TIPLPPTR 1087
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,225,771
Number of Sequences: 27780
Number of extensions: 365991
Number of successful extensions: 1093
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1084
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2339274014
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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