Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP19_F_O20
(917 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 37 0.003
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 34 0.032
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 33 0.043
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 31 0.30
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 29 0.70
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 25 0.75
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 28 2.1
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc... 27 4.9
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 26 8.6
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 37.1 bits (82), Expect = 0.003
Identities = 34/124 (27%), Positives = 36/124 (29%), Gaps = 5/124 (4%)
Frame = +2
Query: 446 PPPPXXXPXXXXXPPPXPPPPXXXXXXAPGPGGRXPXPXGXVGPXPPXXXXXXXXLXFXL 625
PP P PPP P P P P G P P P P
Sbjct: 1050 PPVPKSSSGAPSAPPPV-PAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPS--------VA 1100
Query: 626 XPQXPXPQKKIXXPSSXGGXPPPXKKKXKKXP-PXXXGXXP---PXXXXXP-PFPXXEPP 790
P P P + + G PP K P P G P P P P P PP
Sbjct: 1101 APPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPP 1160
Query: 791 XPLP 802
P P
Sbjct: 1161 VPKP 1164
Score = 32.3 bits (70), Expect = 0.099
Identities = 31/122 (25%), Positives = 32/122 (26%), Gaps = 8/122 (6%)
Frame = +2
Query: 491 PXPPPPXXXXXXAPGPGGRXPXPXGXVG--PXPPXXXXXXXXLXFXLXPQXPXPQ--KKI 658
P P P P P G P P V P P P P P +
Sbjct: 1102 PPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPV 1161
Query: 659 XXPSSXGGXPPPXKKKXKKXPPXXXGXXP-PXXXXXPPFPXXE---PPXPLPQXQNXXPT 826
PS P P G P P PP P PP P P PT
Sbjct: 1162 PKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPT 1221
Query: 827 RS 832
S
Sbjct: 1222 PS 1223
Score = 27.9 bits (59), Expect = 2.1
Identities = 14/47 (29%), Positives = 15/47 (31%)
Frame = +1
Query: 448 PPPXPXXPGXXGXPPGTPPPXXXXXVXPGPRGAXPXXKXXRWPXXPQ 588
PP G PP P P P P GA P P P+
Sbjct: 1050 PPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPK 1096
Score = 25.8 bits (54), Expect = 8.6
Identities = 16/65 (24%), Positives = 19/65 (29%)
Frame = +3
Query: 636 PPXPKKKFXXXVXRXGXPXPQKKKXKNXPPXKXGXXPPXVXKXPLSRXXNPXPPSPKXKT 815
PP PK P P + P P P+ + PP PK
Sbjct: 1050 PPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSV 1109
Query: 816 XXPPV 830
PPV
Sbjct: 1110 AVPPV 1114
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 33.9 bits (74), Expect = 0.032
Identities = 33/123 (26%), Positives = 34/123 (27%), Gaps = 4/123 (3%)
Frame = +2
Query: 446 PPPPXXXPXXXXXPPPXPPPPXXXXXXAPGPG--GRXPXPXGXVGPXPPXXXXXXXXLXF 619
PPPP P PPP AP P GR +G
Sbjct: 363 PPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLG-NASRTSTPPVPTPP 421
Query: 620 XLXPQXPXPQKKIXXPSSXGGXP--PPXKKKXKKXPPXXXGXXPPXXXXXPPFPXXEPPX 793
L P P PS G P PP PP G P PP PP
Sbjct: 422 SLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGM--PAAPPLPPAAPAPPPA 479
Query: 794 PLP 802
P P
Sbjct: 480 PAP 482
Score = 30.7 bits (66), Expect = 0.30
Identities = 26/117 (22%), Positives = 32/117 (27%)
Frame = +2
Query: 452 PPXXXPXXXXXPPPXPPPPXXXXXXAPGPGGRXPXPXGXVGPXPPXXXXXXXXLXFXLXP 631
PP P PP PPP +P P P P V P L P
Sbjct: 241 PPERVPSLSAPAPPPIPPPSNGTVSSP-PNS-PPRPIAPVSMNPAINSTSKPPLP---PP 295
Query: 632 QXPXPQKKIXXPSSXGGXPPPXKKKXKKXPPXXXGXXPPXXXXXPPFPXXEPPXPLP 802
+ PPP ++ + PP G PP P +P
Sbjct: 296 SSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIP 352
Score = 27.5 bits (58), Expect = 2.8
Identities = 32/142 (22%), Positives = 33/142 (23%), Gaps = 1/142 (0%)
Frame = +2
Query: 449 PPPXXXPXXXXXPPPXPPPPXXXXXXAP-GPGGRXPXPXGXVGPXPPXXXXXXXXLXFXL 625
PP PPP PPP P P GR P P
Sbjct: 325 PPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRA 384
Query: 626 XPQXPXPQKKIXXPSSXGGXPPPXKKKXKKXPPXXXGXXPPXXXXXPPFPXXEPPXPLPQ 805
P P I S+ PP PP P P P PP P
Sbjct: 385 VSNPPAPPPAIPGRSAP-ALPPLGNASRTSTPP-----VPTPPSLPPSAPPSLPPSAPPS 438
Query: 806 XQNXXPTRSXRXRGGTXAPXYP 871
P AP P
Sbjct: 439 LPMGAPAAPPLPPSAPIAPPLP 460
Score = 27.1 bits (57), Expect = 3.7
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = +1
Query: 766 PFPXXGTPXPPPPXPKXXPHPFSEGP 843
P P G PPPP P+ P + P
Sbjct: 352 PLPPQGRSAPPPPPPRSAPSTGRQPP 377
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 33.5 bits (73), Expect = 0.043
Identities = 17/47 (36%), Positives = 17/47 (36%)
Frame = +2
Query: 446 PPPPXXXPXXXXXPPPXPPPPXXXXXXAPGPGGRXPXPXGXVGPXPP 586
PPPP P P P PP P P P P G G PP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPP---PPPPPGVAGAGPP 776
Score = 30.7 bits (66), Expect = 0.30
Identities = 16/47 (34%), Positives = 16/47 (34%)
Frame = +2
Query: 446 PPPPXXXPXXXXXPPPXPPPPXXXXXXAPGPGGRXPXPXGXVGPXPP 586
PPP P P P PPP P P P GP PP
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPP---PPPGVAGAGPPPP 778
Score = 30.7 bits (66), Expect = 0.30
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +2
Query: 446 PPPPXXXPXXXXXPPPXPPPP 508
PPPP P PP PPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPP 781
Score = 30.7 bits (66), Expect = 0.30
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +2
Query: 446 PPPPXXXPXXXXXPPPXPPPP 508
PPPP PPP PPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPP 782
Score = 30.7 bits (66), Expect = 0.30
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +2
Query: 446 PPPPXXXPXXXXXPPPXPPPP 508
PPPP PPP PPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPPPPP 783
Score = 30.3 bits (65), Expect = 0.40
Identities = 14/35 (40%), Positives = 14/35 (40%)
Frame = +1
Query: 448 PPPXPXXPGXXGXPPGTPPPXXXXXVXPGPRGAXP 552
PPP P PG G P PPP G R P
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAP 795
Score = 29.1 bits (62), Expect = 0.92
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +1
Query: 742 PPXXXXXPPFPXXGTPXPPPPXP 810
P PP P G P PPPP P
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPP 768
Score = 27.9 bits (59), Expect = 2.1
Identities = 15/49 (30%), Positives = 15/49 (30%)
Frame = +3
Query: 441 PXPPPXXXXPXXXGXPPRXPPPQXXXXGXPRAPGGGAXXQXGALAXXPP 587
P PPP P P PPP G P P G PP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 27.9 bits (59), Expect = 2.1
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = +3
Query: 441 PXPPPXXXXPXXXGXPPRXPPPQXXXXGXPR 533
P PPP G PP PPP G R
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPPAVSAGGSR 791
Score = 27.1 bits (57), Expect = 3.7
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = +2
Query: 488 PPXPPPPXXXXXXAPGPGGRXPXPXGXVGPXPP 586
PP PPP AP P P GP PP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPP 764
Score = 26.6 bits (56), Expect = 4.9
Identities = 11/30 (36%), Positives = 11/30 (36%)
Frame = +1
Query: 721 PRXXXXXPPXXXXXPPFPXXGTPXPPPPXP 810
P PP P G P PPPP P
Sbjct: 754 PAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 25.8 bits (54), Expect = 8.6
Identities = 12/35 (34%), Positives = 12/35 (34%)
Frame = +1
Query: 448 PPPXPXXPGXXGXPPGTPPPXXXXXVXPGPRGAXP 552
P P P G PP PPP P P P
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 30.7 bits (66), Expect = 0.30
Identities = 14/35 (40%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Frame = +2
Query: 446 PPPPXXXPXXXXXPPPXPPP-PXXXXXXAPGPGGR 547
PPPP P P PPP P P PG R
Sbjct: 1715 PPPPSAPPMPAGPPSAPPPPLPASSAPSVPNPGDR 1749
Score = 28.3 bits (60), Expect = 1.6
Identities = 13/38 (34%), Positives = 13/38 (34%)
Frame = +2
Query: 689 PPXKKKXKKXPPXXXGXXPPXXXXXPPFPXXEPPXPLP 802
PP PP PP P P PP PLP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
Score = 26.6 bits (56), Expect = 4.9
Identities = 16/51 (31%), Positives = 17/51 (33%)
Frame = +1
Query: 718 SPRXXXXXPPXXXXXPPFPXXGTPXPPPPXPKXXPHPFSEGPGGDXRPXVP 870
+P PP P P PPPP P P P S P P P
Sbjct: 1682 APAHPVSTPPVRPQSAAPPQMSAPTPPPP-PMSVPPPPSAPPMPAGPPSAP 1731
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 29.5 bits (63), Expect = 0.70
Identities = 18/58 (31%), Positives = 21/58 (36%)
Frame = +2
Query: 629 PQXPXPQKKIXXPSSXGGXPPPXKKKXKKXPPXXXGXXPPXXXXXPPFPXXEPPXPLP 802
P P PQ ++ P+S PP PP PP PP P PP P
Sbjct: 128 PAPPTPQSELRPPTS---APP-----RPSIPPPSPASAPPIPSKAPPIPSSLPPPAQP 177
Score = 29.5 bits (63), Expect = 0.70
Identities = 20/56 (35%), Positives = 20/56 (35%)
Frame = +2
Query: 638 PXPQKKIXXPSSXGGXPPPXKKKXKKXPPXXXGXXPPXXXXXPPFPXXEPPXPLPQ 805
P P K PSS PP K PP P PP P PP PL Q
Sbjct: 159 PIPSKAPPIPSSL--PPPAQPAAPVKSPPSA----PSLPSAVPPMPPKVPPPPLSQ 208
Score = 27.9 bits (59), Expect = 2.1
Identities = 16/59 (27%), Positives = 20/59 (33%), Gaps = 3/59 (5%)
Frame = +2
Query: 665 PSSXGGXPPPXKKKXKKXPPXXXGXXPPXXXXXPPFPXXEPPXPL---PQXQNXXPTRS 832
PS+ P + + P PP PP P PP P P Q P +S
Sbjct: 125 PSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKS 183
Score = 26.6 bits (56), Expect = 4.9
Identities = 28/117 (23%), Positives = 32/117 (27%), Gaps = 2/117 (1%)
Frame = +2
Query: 452 PPXXXPXXXXXPPPXPPPPXXXXXXAPGPGGRXPXPXGXVGP--XPPXXXXXXXXLXFXL 625
PP P PPP P AP P P P PP + +
Sbjct: 139 PPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVP-PM 197
Query: 626 XPQXPXPQKKIXXPSSXGGXPPPXKKKXKKXPPXXXGXXPPXXXXXPPFPXXEPPXP 796
P+ P P P S + PP G P P FP P P
Sbjct: 198 PPKVPPP------PLSQAPVANTSSRPSSFAPP--AGHAPNVTSESPKFPNRGPSIP 246
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.4 bits (53), Expect(2) = 0.75
Identities = 9/19 (47%), Positives = 9/19 (47%)
Frame = +2
Query: 452 PPXXXPXXXXXPPPXPPPP 508
P P PPP PPPP
Sbjct: 179 PATSLPSDYNPPPPPPPPP 197
Score = 23.4 bits (48), Expect(2) = 3.5
Identities = 12/45 (26%), Positives = 12/45 (26%)
Frame = +1
Query: 676 GXXXPXXKKKKXKXSPRXXXXXPPXXXXXPPFPXXGTPXPPPPXP 810
G P SP P P P PPPP P
Sbjct: 152 GVNAPTVSAPNSMVSPPPSFQPPSAAAPATSLPSDYNPPPPPPPP 196
Score = 22.2 bits (45), Expect(2) = 0.75
Identities = 12/58 (20%), Positives = 16/58 (27%)
Frame = +2
Query: 629 PQXPXPQKKIXXPSSXGGXPPPXKKKXKKXPPXXXGXXPPXXXXXPPFPXXEPPXPLP 802
P P P + ++ P + P P P P PP LP
Sbjct: 190 PPPPPPPPAVEDQAADANEPDDYYSSGRAVSPEIPPTYTPKQADPLPAPPPPPPPTLP 247
Score = 21.8 bits (44), Expect(2) = 3.5
Identities = 7/12 (58%), Positives = 7/12 (58%)
Frame = +1
Query: 787 PXPPPPXPKXXP 822
P PPPP P P
Sbjct: 236 PAPPPPPPPTLP 247
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.9 bits (59), Expect = 2.1
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +2
Query: 446 PPPPXXXPXXXXXPPPXPPPP 508
PPPP P P PPPP
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPP 29
Score = 27.5 bits (58), Expect = 2.8
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +2
Query: 446 PPPPXXXPXXXXXPPPXPPPP 508
PPPP PP PPPP
Sbjct: 10 PPPPPPPGFEPPSQPPPPPPP 30
Score = 27.1 bits (57), Expect = 3.7
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = +2
Query: 485 PPPXPPPPXXXXXXAPGPGGRXPXPXGXV 571
PPP PPPP P P P P G V
Sbjct: 9 PPPPPPPPGFEPPSQPPP----PPPPGYV 33
>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 379
Score = 26.6 bits (56), Expect = 4.9
Identities = 21/63 (33%), Positives = 23/63 (36%), Gaps = 6/63 (9%)
Frame = -3
Query: 846 PRXLXERVGXXFWXWGRGXGGSXXGKGG---XXXXXGGXXPXXXGGXFXFFF---FXGGG 685
P + ERV + G G GG G GG GG GG F F GGG
Sbjct: 121 PNDIFERVFGHAFAGGGGMGGGMGGMGGMDDDMDMDGGFGTRTRGGGMPGGFANMFGGGG 180
Query: 684 XPP 676
P
Sbjct: 181 AGP 183
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 25.8 bits (54), Expect = 8.6
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +1
Query: 784 TPXPPPPXPKXXPHPFSEGPGGD 852
+P PPPP P+ H P GD
Sbjct: 369 SPPPPPPPPELLNHSPKSRPLGD 391
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,876,354
Number of Sequences: 5004
Number of extensions: 29847
Number of successful extensions: 305
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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