Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_O16
         (925 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase Dld1|Schi...    32   0.099
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi...    32   0.13 
SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces pombe...    31   0.30 
SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces po...    31   0.30 
SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl modifica...    29   0.70 
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    29   0.93 
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|...    28   1.6  
SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr ...    28   2.1  
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    27   3.7  
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei...    26   6.5  
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   8.6  
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc...    26   8.6  
SPCC1020.06c |tal1||transaldolase |Schizosaccharomyces pombe|chr...    26   8.6  
SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2...    26   8.6  
SPAC8C9.14 |prr1||transcription factor Prr1|Schizosaccharomyces ...    26   8.6  

>SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase
           Dld1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 32.3 bits (70), Expect = 0.099
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = +3

Query: 249 KNVTVIGGGLMGSGIAQVSAQAGQNVTLVDVSNDALAKAKKSIGTNLSRVAKK 407
           K +TV+GGG++G  +  V ++ G  VT+V+            I   LSR+  K
Sbjct: 218 KKMTVLGGGIIGLEMGSVWSRLGAEVTVVEFLPAVGGPMDADISKALSRIISK 270


>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
           Gut2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 649

 Score = 31.9 bits (69), Expect = 0.13
 Identities = 15/41 (36%), Positives = 26/41 (63%)
 Frame = +3

Query: 252 NVTVIGGGLMGSGIAQVSAQAGQNVTLVDVSNDALAKAKKS 374
           +V +IGGG  G+G+A  ++  G NV L++ ++ A   + KS
Sbjct: 69  DVLIIGGGATGTGVAVDASTRGLNVCLLEKTDFASETSSKS 109


>SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 346

 Score = 30.7 bits (66), Expect = 0.30
 Identities = 23/71 (32%), Positives = 31/71 (43%)
 Frame = +3

Query: 216 FSSSSAMQSAIKNVTVIGGGLMGSGIAQVSAQAGQNVTLVDVSNDALAKAKKSIGTNLSR 395
           F S         NV V+G G + +   Q +  AG NVT+   S++ L  AKK   T+   
Sbjct: 156 FGSKEHQVKPGNNVLVLGTGGVSTFALQFALAAGANVTVTSSSDEKLEFAKKLGATHTIN 215

Query: 396 VAKKMYKDNPQ 428
                YK  PQ
Sbjct: 216 -----YKKTPQ 221


>SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 261

 Score = 30.7 bits (66), Expect = 0.30
 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +3

Query: 249 KNVTVIGGGL-MGSGIAQVSAQAGQNVTLVDVSNDALAKAKK 371
           KN  V G    +G  IA   AQAG NV +  ++ D   KAKK
Sbjct: 22  KNCVVFGAAKGIGFSIATAFAQAGGNVIITYLTTDPTEKAKK 63


>SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl
           modification enzyme|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 666

 Score = 29.5 bits (63), Expect = 0.70
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +3

Query: 249 KNVTVIGGGLMGSGIAQVSAQAGQNVTLVDVSNDALAK 362
           KNV VIGGG  G   A  +++ G   TL+  S D + +
Sbjct: 17  KNVVVIGGGHAGVEAAAAASRLGAKTTLLTKSFDNIGQ 54


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 29.1 bits (62), Expect = 0.93
 Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
 Frame = +3

Query: 204 IVRNFSSSSAM--QSAIKNVTVIGGGLMGSGIAQVSAQAGQNVTLVDVSNDALAKAKKSI 377
           I+RNF  SSA+  QS++ NV V GG    + ++   A       L +V  D   K  K  
Sbjct: 581 IIRNFQFSSALKRQSSVSNVRVSGGSFK-TFVSVKGAPEVIATMLREVPKD-YEKIYKDY 638

Query: 378 GTNLSRVAKKMYK 416
           G   SRV    YK
Sbjct: 639 GRKGSRVLALGYK 651


>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
            Snf21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1199

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 28/129 (21%), Positives = 51/129 (39%), Gaps = 5/129 (3%)
 Frame = +3

Query: 324  VTLVDVSNDALAKA--KKSIGTNLSRVAKKMYKDNPQEGEKFVNDSLGRINTATDAAEAS 497
            +T   V  + LA+A  K  I   + +  K   K  P+E E F+   L   N   +  E  
Sbjct: 861  ITEKSVEENILARAQYKLDIDGKVIQAGKFDNKSTPEEREAFLRSLLENENGEEENDEKG 920

Query: 498  KSADLVVEAIVENIGVKHKLFKQLDGVXPSHTIFASNTSS---LSINEIASVVKKERQIW 668
            +  D  +  I+     + +LFKQ+       + +  N      + ++E+    ++E    
Sbjct: 921  ELDDDELNEILARGDDELRLFKQMTEDLERESPYGKNKEKERLIQVSELPEFYQREEPEK 980

Query: 669  RSSFLQSGP 695
             +  LQ  P
Sbjct: 981  TTDLLQEEP 989


>SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 513

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 2/68 (2%)
 Frame = +3

Query: 261 VIGGGLMGSGIAQVSAQAGQNVTLVDVSNDALA--KAKKSIGTNLSRVAKKMYKDNPQEG 434
           VIGGGL G          G NV L+D  N A      K + G N +    +  +      
Sbjct: 43  VIGGGLAGLSATNTILDLGGNVLLLD-KNTAFGGNSVKAASGINAAPTQLQFDQHVSDSV 101

Query: 435 EKFVNDSL 458
             F NDS+
Sbjct: 102 NTFYNDSI 109


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 218 FKFLCNAKCYQECNGYWRWSNGL 286
           F F+CNA  Y   N Y  W+  L
Sbjct: 619 FYFVCNATSYSSLNPYGNWARPL 641


>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
           Vps41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 886

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +2

Query: 206 RKKFFKFLCNAKCY 247
           RK+FF FL N +CY
Sbjct: 629 RKRFFDFLVNTQCY 642


>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 565

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -3

Query: 611 CV*CENSV-TWXYAIKLLKQFMLHSNIFNN 525
           CV CE    +W + +K + Q ++H+N   N
Sbjct: 406 CVLCERKFQSWGHVVKHITQSIMHNNNLKN 435


>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1573

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = +3

Query: 237 QSAIKNVTVI--GGGLMGSGIAQVSAQAGQNVTLVDVSNDALAKAKKSIG 380
           QS  ++  +I  GGG++G  +  V+A   + +  + +    LA    SIG
Sbjct: 101 QSCTRDTILIAMGGGVIGDLVGYVAASFMRGIRFIQMPTTLLAMVDSSIG 150


>SPCC1020.06c |tal1||transaldolase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 322

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
 Frame = +3

Query: 342 SNDALAK---AKKSIGTNLSRVAKKMYKDNPQEGEKFVNDSLGRINTATDAAEASKSAD 509
           S DA+ K   A K+   NL +V+     D P+    F ND +  +  +T  A  +K AD
Sbjct: 254 STDAVPKKLDASKASSLNLEKVS--YLTDEPKFRFDFNNDEMAVVKLSTGIAAFAKDAD 310


>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
 Frame = +3

Query: 387 LSRVAKKMYKDNPQEGEKFV--NDSLGRINTATDAA--EASKSAD 509
           +S++A+     NP + E+FV   D+LG      D+   EAS  AD
Sbjct: 102 ISKIAEAAQASNPDDEEEFVMEEDNLGEAPLLVDSESYEASVKAD 146


>SPAC8C9.14 |prr1||transcription factor Prr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 539

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +3

Query: 282 GSGIAQVSAQAGQNVTLVDVSNDALAKAKKSIGTNLSRV 398
           GS    + + A    +   +SND+LAKA  S+ T++S++
Sbjct: 317 GSFTTHLDSNASMAKSFSQISNDSLAKA-SSVATSMSQM 354


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,077,578
Number of Sequences: 5004
Number of extensions: 59373
Number of successful extensions: 146
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)