Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP19_F_O15
(902 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 36 0.052
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 36 0.052
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 35 0.092
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 35 0.092
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 35 0.092
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 33 0.28
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 33 0.28
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 33 0.28
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 33 0.37
AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical ... 31 1.1
AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical ... 31 1.1
AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical... 30 2.0
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 30 2.0
AL032637-3|CAA21617.1| 90|Caenorhabditis elegans Hypothetical ... 30 2.6
Z69360-4|CAC42291.2| 732|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z69360-3|CAA93286.2| 369|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z69360-2|CAA93285.2| 780|Caenorhabditis elegans Hypothetical pr... 29 3.4
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 29 3.4
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 29 3.4
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 29 3.4
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 29 3.4
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 29 3.4
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 29 3.4
AL110490-7|CAD59175.1| 533|Caenorhabditis elegans Hypothetical ... 29 6.0
AL110490-6|CAB54442.2| 687|Caenorhabditis elegans Hypothetical ... 29 6.0
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 28 7.9
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 28 7.9
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 35.5 bits (78), Expect = 0.052
Identities = 17/60 (28%), Positives = 19/60 (31%)
Frame = +1
Query: 379 PPXXXXFXPPXPXXPPXKKXXXPPKXXFPPXPXXXXXXPPLXXKXXPPXGPPXXFXXXXP 558
PP PP P PP + P PP P PP PP P + P
Sbjct: 289 PPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMP 348
Score = 32.7 bits (71), Expect = 0.37
Identities = 18/53 (33%), Positives = 18/53 (33%)
Frame = +3
Query: 375 PXPPXXXXXPPXPXXPPXXKXPXXPKXFXPXXSXXXGXXPPPFXXXXPPGGXP 533
P PP P P P P P F P G PPP PGG P
Sbjct: 298 PPPPPPPGRTPGPPGMPGMPPPPPPSRFGP--PGMGGMPPPPPPGMRYPGGMP 348
Score = 29.1 bits (62), Expect = 4.5
Identities = 15/52 (28%), Positives = 18/52 (34%)
Frame = +1
Query: 379 PPXXXXFXPPXPXXPPXKKXXXPPKXXFPPXPXXXXXXPPLXXKXXPPXGPP 534
PP + P PP + P +PP P PP PP PP
Sbjct: 337 PPPGMRYPGGMPPPPPPRYPSAGP-GMYPPPPPSRPPAPPSGHGMIPPPPPP 387
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 35.5 bits (78), Expect = 0.052
Identities = 17/60 (28%), Positives = 19/60 (31%)
Frame = +1
Query: 379 PPXXXXFXPPXPXXPPXKKXXXPPKXXFPPXPXXXXXXPPLXXKXXPPXGPPXXFXXXXP 558
PP PP P PP + P PP P PP PP P + P
Sbjct: 299 PPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMP 358
Score = 32.7 bits (71), Expect = 0.37
Identities = 18/53 (33%), Positives = 18/53 (33%)
Frame = +3
Query: 375 PXPPXXXXXPPXPXXPPXXKXPXXPKXFXPXXSXXXGXXPPPFXXXXPPGGXP 533
P PP P P P P P F P G PPP PGG P
Sbjct: 308 PPPPPPPGRTPGPPGMPGMPPPPPPSRFGP--PGMGGMPPPPPPGMRYPGGMP 358
Score = 29.1 bits (62), Expect = 4.5
Identities = 15/52 (28%), Positives = 18/52 (34%)
Frame = +1
Query: 379 PPXXXXFXPPXPXXPPXKKXXXPPKXXFPPXPXXXXXXPPLXXKXXPPXGPP 534
PP + P PP + P +PP P PP PP PP
Sbjct: 347 PPPGMRYPGGMPPPPPPRYPSAGP-GMYPPPPPSRPPAPPSGHGMIPPPPPP 397
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 34.7 bits (76), Expect = 0.092
Identities = 20/64 (31%), Positives = 20/64 (31%)
Frame = +3
Query: 369 GXPXPPXXXXXPPXPXXPPXXKXPXXPKXFXPXXSXXXGXXPPPFXXXXPPGGXPXXFFX 548
G P PP PP PP P P P PPP PP P F
Sbjct: 725 GPPPPPPPGGLPPITGGPPP---PPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFK 781
Query: 549 XXPP 560
PP
Sbjct: 782 GGPP 785
Score = 34.3 bits (75), Expect = 0.12
Identities = 20/60 (33%), Positives = 20/60 (33%)
Frame = +3
Query: 381 PPXXXXXPPXPXXPPXXKXPXXPKXFXPXXSXXXGXXPPPFXXXXPPGGXPXXFFXXXPP 560
PP PP P PP P P G PPP PPGG P PP
Sbjct: 707 PPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPP-----PPGGLPPISGGPPPP 761
Score = 32.7 bits (71), Expect = 0.37
Identities = 15/49 (30%), Positives = 15/49 (30%)
Frame = +1
Query: 754 PPXXPXXXXXXXXXXPPXXXXPXXXXPXXXXPPPXXPPXXXXXPPXXXP 900
PP P PP P P PPP PP PP P
Sbjct: 727 PPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPP 775
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/38 (34%), Positives = 14/38 (36%)
Frame = +1
Query: 421 PPXKKXXXPPKXXFPPXPXXXXXXPPLXXKXXPPXGPP 534
PP PP PP P PP+ PP PP
Sbjct: 728 PPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPP 765
Score = 29.5 bits (63), Expect = 3.4
Identities = 19/55 (34%), Positives = 19/55 (34%)
Frame = +1
Query: 370 GXXPPXXXXFXPPXPXXPPXKKXXXPPKXXFPPXPXXXXXXPPLXXKXXPPXGPP 534
G PP PP PP PP PP P PP K PP PP
Sbjct: 741 GPPPPPPPGGLPPISGGPPPPP---PPPGGCPPPPPPP---PPGGFKGGPPPPPP 789
Score = 29.1 bits (62), Expect = 4.5
Identities = 14/49 (28%), Positives = 14/49 (28%)
Frame = +1
Query: 754 PPXXPXXXXXXXXXXPPXXXXPXXXXPXXXXPPPXXPPXXXXXPPXXXP 900
PP P PP P P PP PP PP P
Sbjct: 716 PPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPP 764
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 34.7 bits (76), Expect = 0.092
Identities = 20/64 (31%), Positives = 20/64 (31%)
Frame = +3
Query: 369 GXPXPPXXXXXPPXPXXPPXXKXPXXPKXFXPXXSXXXGXXPPPFXXXXPPGGXPXXFFX 548
G P PP PP PP P P P PPP PP P F
Sbjct: 725 GPPPPPPPGGLPPITGGPPP---PPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFK 781
Query: 549 XXPP 560
PP
Sbjct: 782 GGPP 785
Score = 34.3 bits (75), Expect = 0.12
Identities = 20/60 (33%), Positives = 20/60 (33%)
Frame = +3
Query: 381 PPXXXXXPPXPXXPPXXKXPXXPKXFXPXXSXXXGXXPPPFXXXXPPGGXPXXFFXXXPP 560
PP PP P PP P P G PPP PPGG P PP
Sbjct: 707 PPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPP-----PPGGLPPISGGPPPP 761
Score = 32.7 bits (71), Expect = 0.37
Identities = 15/49 (30%), Positives = 15/49 (30%)
Frame = +1
Query: 754 PPXXPXXXXXXXXXXPPXXXXPXXXXPXXXXPPPXXPPXXXXXPPXXXP 900
PP P PP P P PPP PP PP P
Sbjct: 727 PPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPP 775
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/38 (34%), Positives = 14/38 (36%)
Frame = +1
Query: 421 PPXKKXXXPPKXXFPPXPXXXXXXPPLXXKXXPPXGPP 534
PP PP PP P PP+ PP PP
Sbjct: 728 PPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPP 765
Score = 29.5 bits (63), Expect = 3.4
Identities = 19/55 (34%), Positives = 19/55 (34%)
Frame = +1
Query: 370 GXXPPXXXXFXPPXPXXPPXKKXXXPPKXXFPPXPXXXXXXPPLXXKXXPPXGPP 534
G PP PP PP PP PP P PP K PP PP
Sbjct: 741 GPPPPPPPGGLPPISGGPPPPP---PPPGGCPPPPPPP---PPGGFKGGPPPPPP 789
Score = 29.1 bits (62), Expect = 4.5
Identities = 14/49 (28%), Positives = 14/49 (28%)
Frame = +1
Query: 754 PPXXPXXXXXXXXXXPPXXXXPXXXXPXXXXPPPXXPPXXXXXPPXXXP 900
PP P PP P P PP PP PP P
Sbjct: 716 PPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPP 764
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 34.7 bits (76), Expect = 0.092
Identities = 20/64 (31%), Positives = 20/64 (31%)
Frame = +3
Query: 369 GXPXPPXXXXXPPXPXXPPXXKXPXXPKXFXPXXSXXXGXXPPPFXXXXPPGGXPXXFFX 548
G P PP PP PP P P P PPP PP P F
Sbjct: 308 GPPPPPPPGGLPPITGGPPP---PPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFK 364
Query: 549 XXPP 560
PP
Sbjct: 365 GGPP 368
Score = 34.3 bits (75), Expect = 0.12
Identities = 20/60 (33%), Positives = 20/60 (33%)
Frame = +3
Query: 381 PPXXXXXPPXPXXPPXXKXPXXPKXFXPXXSXXXGXXPPPFXXXXPPGGXPXXFFXXXPP 560
PP PP P PP P P G PPP PPGG P PP
Sbjct: 290 PPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPP-----PPGGLPPISGGPPPP 344
Score = 32.7 bits (71), Expect = 0.37
Identities = 15/49 (30%), Positives = 15/49 (30%)
Frame = +1
Query: 754 PPXXPXXXXXXXXXXPPXXXXPXXXXPXXXXPPPXXPPXXXXXPPXXXP 900
PP P PP P P PPP PP PP P
Sbjct: 310 PPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPP 358
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/38 (34%), Positives = 14/38 (36%)
Frame = +1
Query: 421 PPXKKXXXPPKXXFPPXPXXXXXXPPLXXKXXPPXGPP 534
PP PP PP P PP+ PP PP
Sbjct: 311 PPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPP 348
Score = 29.5 bits (63), Expect = 3.4
Identities = 19/55 (34%), Positives = 19/55 (34%)
Frame = +1
Query: 370 GXXPPXXXXFXPPXPXXPPXKKXXXPPKXXFPPXPXXXXXXPPLXXKXXPPXGPP 534
G PP PP PP PP PP P PP K PP PP
Sbjct: 324 GPPPPPPPGGLPPISGGPPPPP---PPPGGCPPPPPPP---PPGGFKGGPPPPPP 372
Score = 29.1 bits (62), Expect = 4.5
Identities = 14/49 (28%), Positives = 14/49 (28%)
Frame = +1
Query: 754 PPXXPXXXXXXXXXXPPXXXXPXXXXPXXXXPPPXXPPXXXXXPPXXXP 900
PP P PP P P PP PP PP P
Sbjct: 299 PPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPP 347
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 33.1 bits (72), Expect = 0.28
Identities = 18/53 (33%), Positives = 19/53 (35%), Gaps = 2/53 (3%)
Frame = +3
Query: 369 GXPXPPXXXXXPPXPXX--PPXXKXPXXPKXFXPXXSXXXGXXPPPFXXXXPP 521
G P PP PP P PP + P P S G PPP PP
Sbjct: 270 GSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPP 322
Score = 31.9 bits (69), Expect = 0.65
Identities = 20/62 (32%), Positives = 21/62 (33%), Gaps = 7/62 (11%)
Frame = +1
Query: 370 GXXPPXXXXFXPPXPXX-----PPXKKXXXPPKXXFPPXPXXXXXXPPLXXKXXPPXG-- 528
G PP PP P PP PP PP P PP + PP G
Sbjct: 253 GSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSL 312
Query: 529 PP 534
PP
Sbjct: 313 PP 314
Score = 30.3 bits (65), Expect = 2.0
Identities = 20/65 (30%), Positives = 20/65 (30%), Gaps = 1/65 (1%)
Frame = +3
Query: 369 GXPXPPXXXXXPPXPXXPPXXKXPXXPKXFXPXXSXXXGXXPPPFXXXXPP-GGXPXXFF 545
G P PP PP PP P P P PPP PP G P
Sbjct: 262 GSPPPPRTGSPPP----PPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQA 317
Query: 546 XXXPP 560
PP
Sbjct: 318 GGSPP 322
Score = 29.5 bits (63), Expect = 3.4
Identities = 19/61 (31%), Positives = 20/61 (32%), Gaps = 6/61 (9%)
Frame = +1
Query: 370 GXXPPXXXXFXPPXPXX----PPXKKXXXPPKXXFPPXPXXXXXXPPLXXKXXPPXG--P 531
G PP PP P PP PP+ PP P PP P G P
Sbjct: 262 GSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSP 321
Query: 532 P 534
P
Sbjct: 322 P 322
Score = 28.3 bits (60), Expect = 7.9
Identities = 16/53 (30%), Positives = 16/53 (30%), Gaps = 2/53 (3%)
Frame = +3
Query: 369 GXPXPPXXXXXPPXPXX--PPXXKXPXXPKXFXPXXSXXXGXXPPPFXXXXPP 521
G P PP PP P PP P G PPP PP
Sbjct: 278 GSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPP 330
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 33.1 bits (72), Expect = 0.28
Identities = 18/53 (33%), Positives = 19/53 (35%), Gaps = 2/53 (3%)
Frame = +3
Query: 369 GXPXPPXXXXXPPXPXX--PPXXKXPXXPKXFXPXXSXXXGXXPPPFXXXXPP 521
G P PP PP P PP + P P S G PPP PP
Sbjct: 291 GSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPP 343
Score = 31.9 bits (69), Expect = 0.65
Identities = 20/62 (32%), Positives = 21/62 (33%), Gaps = 7/62 (11%)
Frame = +1
Query: 370 GXXPPXXXXFXPPXPXX-----PPXKKXXXPPKXXFPPXPXXXXXXPPLXXKXXPPXG-- 528
G PP PP P PP PP PP P PP + PP G
Sbjct: 274 GSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSL 333
Query: 529 PP 534
PP
Sbjct: 334 PP 335
Score = 30.3 bits (65), Expect = 2.0
Identities = 20/65 (30%), Positives = 20/65 (30%), Gaps = 1/65 (1%)
Frame = +3
Query: 369 GXPXPPXXXXXPPXPXXPPXXKXPXXPKXFXPXXSXXXGXXPPPFXXXXPP-GGXPXXFF 545
G P PP PP PP P P P PPP PP G P
Sbjct: 283 GSPPPPRTGSPPP----PPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQA 338
Query: 546 XXXPP 560
PP
Sbjct: 339 GGSPP 343
Score = 29.5 bits (63), Expect = 3.4
Identities = 19/61 (31%), Positives = 20/61 (32%), Gaps = 6/61 (9%)
Frame = +1
Query: 370 GXXPPXXXXFXPPXPXX----PPXKKXXXPPKXXFPPXPXXXXXXPPLXXKXXPPXG--P 531
G PP PP P PP PP+ PP P PP P G P
Sbjct: 283 GSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSP 342
Query: 532 P 534
P
Sbjct: 343 P 343
Score = 28.3 bits (60), Expect = 7.9
Identities = 16/53 (30%), Positives = 16/53 (30%), Gaps = 2/53 (3%)
Frame = +3
Query: 369 GXPXPPXXXXXPPXPXX--PPXXKXPXXPKXFXPXXSXXXGXXPPPFXXXXPP 521
G P PP PP P PP P G PPP PP
Sbjct: 299 GSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPP 351
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 33.1 bits (72), Expect = 0.28
Identities = 18/53 (33%), Positives = 19/53 (35%), Gaps = 2/53 (3%)
Frame = +3
Query: 369 GXPXPPXXXXXPPXPXX--PPXXKXPXXPKXFXPXXSXXXGXXPPPFXXXXPP 521
G P PP PP P PP + P P S G PPP PP
Sbjct: 276 GSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPP 328
Score = 31.9 bits (69), Expect = 0.65
Identities = 20/62 (32%), Positives = 21/62 (33%), Gaps = 7/62 (11%)
Frame = +1
Query: 370 GXXPPXXXXFXPPXPXX-----PPXKKXXXPPKXXFPPXPXXXXXXPPLXXKXXPPXG-- 528
G PP PP P PP PP PP P PP + PP G
Sbjct: 259 GSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSL 318
Query: 529 PP 534
PP
Sbjct: 319 PP 320
Score = 30.3 bits (65), Expect = 2.0
Identities = 20/65 (30%), Positives = 20/65 (30%), Gaps = 1/65 (1%)
Frame = +3
Query: 369 GXPXPPXXXXXPPXPXXPPXXKXPXXPKXFXPXXSXXXGXXPPPFXXXXPP-GGXPXXFF 545
G P PP PP PP P P P PPP PP G P
Sbjct: 268 GSPPPPRTGSPPP----PPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQA 323
Query: 546 XXXPP 560
PP
Sbjct: 324 GGSPP 328
Score = 29.5 bits (63), Expect = 3.4
Identities = 19/61 (31%), Positives = 20/61 (32%), Gaps = 6/61 (9%)
Frame = +1
Query: 370 GXXPPXXXXFXPPXPXX----PPXKKXXXPPKXXFPPXPXXXXXXPPLXXKXXPPXG--P 531
G PP PP P PP PP+ PP P PP P G P
Sbjct: 268 GSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSP 327
Query: 532 P 534
P
Sbjct: 328 P 328
Score = 28.3 bits (60), Expect = 7.9
Identities = 16/53 (30%), Positives = 16/53 (30%), Gaps = 2/53 (3%)
Frame = +3
Query: 369 GXPXPPXXXXXPPXPXX--PPXXKXPXXPKXFXPXXSXXXGXXPPPFXXXXPP 521
G P PP PP P PP P G PPP PP
Sbjct: 284 GSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPP 336
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 32.7 bits (71), Expect = 0.37
Identities = 18/53 (33%), Positives = 18/53 (33%)
Frame = +3
Query: 375 PXPPXXXXXPPXPXXPPXXKXPXXPKXFXPXXSXXXGXXPPPFXXXXPPGGXP 533
P PP PP P PP P P F P PPP PP P
Sbjct: 32 PPPPPMCAPPPLPCPPP----PICPPQFCPPPPMCPPPPPPPPPPMCPPPPPP 80
Score = 32.7 bits (71), Expect = 0.37
Identities = 15/49 (30%), Positives = 15/49 (30%)
Frame = +1
Query: 754 PPXXPXXXXXXXXXXPPXXXXPXXXXPXXXXPPPXXPPXXXXXPPXXXP 900
PP P PP P P PPP PP PP P
Sbjct: 32 PPPPPMCAPPPLPCPPPPICPPQFCPPPPMCPPPPPPPPPPMCPPPPPP 80
Score = 31.5 bits (68), Expect = 0.85
Identities = 18/52 (34%), Positives = 19/52 (36%)
Frame = +1
Query: 379 PPXXXXFXPPXPXXPPXKKXXXPPKXXFPPXPXXXXXXPPLXXKXXPPXGPP 534
PP PP P PP PP+ PP P PP PP PP
Sbjct: 33 PPPPMCAPPPLPCPPPP---ICPPQFC-PPPPMCPPPPPPPPPPMCPPPPPP 80
Score = 29.5 bits (63), Expect = 3.4
Identities = 14/43 (32%), Positives = 14/43 (32%)
Frame = +1
Query: 406 PXPXXPPXKKXXXPPKXXFPPXPXXXXXXPPLXXKXXPPXGPP 534
P P PP PP PP P P PP PP
Sbjct: 27 PPPCPPPPPPMCAPPPLPCPPPPICPPQFCPPPPMCPPPPPPP 69
Score = 28.7 bits (61), Expect = 6.0
Identities = 14/49 (28%), Positives = 14/49 (28%)
Frame = +1
Query: 754 PPXXPXXXXXXXXXXPPXXXXPXXXXPXXXXPPPXXPPXXXXXPPXXXP 900
PP P P P P PPP PP PP P
Sbjct: 27 PPPCPPPPPPMCAPPPLPCPPPPICPPQFCPPPPMCPPPPPPPPPPMCP 75
>AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical
protein R148.5b protein.
Length = 505
Score = 31.1 bits (67), Expect = 1.1
Identities = 18/55 (32%), Positives = 20/55 (36%), Gaps = 3/55 (5%)
Frame = +1
Query: 379 PPXXXXFXPPXPXXPPXKKXXXPPKXXFPPXPXXXXXXPP---LXXKXXPPXGPP 534
PP + PP P P PP FPP P PP + PP PP
Sbjct: 270 PPPHHPYGPPHPMHHPY-AMMPPPFGFFPPPPRGHFPPPPPHFMGRGMPPPFMPP 323
>AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical
protein R148.5a protein.
Length = 528
Score = 31.1 bits (67), Expect = 1.1
Identities = 18/55 (32%), Positives = 20/55 (36%), Gaps = 3/55 (5%)
Frame = +1
Query: 379 PPXXXXFXPPXPXXPPXKKXXXPPKXXFPPXPXXXXXXPP---LXXKXXPPXGPP 534
PP + PP P P PP FPP P PP + PP PP
Sbjct: 270 PPPHHPYGPPHPMHHPY-AMMPPPFGFFPPPPRGHFPPPPPHFMGRGMPPPFMPP 323
>AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical
protein Y43F8C.20 protein.
Length = 193
Score = 30.3 bits (65), Expect = 2.0
Identities = 16/44 (36%), Positives = 17/44 (38%)
Frame = -1
Query: 533 GGPXGGXXXXKRGGXXXXXXGXGGXKXFGGXXXFXXGGXXGXGG 402
GG GG RGG G G +GG GG G GG
Sbjct: 130 GGGGGGRGGGGRGGDGRGPPGSNGGGDWGGNGGGGRGGGGGRGG 173
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 30.3 bits (65), Expect = 2.0
Identities = 17/56 (30%), Positives = 18/56 (32%)
Frame = +3
Query: 375 PXPPXXXXXPPXPXXPPXXKXPXXPKXFXPXXSXXXGXXPPPFXXXXPPGGXPXXF 542
P PP PP P PP P P+ P PP F G P F
Sbjct: 707 PPPPGIPGYPPAP--PPPGVGPPPPQGIPPMGFDPNKPPPPMFQQGFNAGAPPPPF 760
>AL032637-3|CAA21617.1| 90|Caenorhabditis elegans Hypothetical
protein Y43F8C.2 protein.
Length = 90
Score = 29.9 bits (64), Expect = 2.6
Identities = 21/71 (29%), Positives = 24/71 (33%), Gaps = 2/71 (2%)
Frame = -1
Query: 557 GXXXKKXXGGPXGGXXXXKRGGXXXXXXGXGGXKXFGGXXXFXXGGXXG--XGGXXXXXX 384
G ++ GG G +RGG G G FGG GG G G
Sbjct: 20 GFGGQQSFGGRGGQFGGMQRGGFNGNRGGFGQQSQFGGRGGNQFGGRGGSQFNGRGGNQF 79
Query: 383 GGXXPXXFXKK 351
GG F KK
Sbjct: 80 GGRGGFGFGKK 90
>Z69360-4|CAC42291.2| 732|Caenorhabditis elegans Hypothetical
protein F25H8.5c protein.
Length = 732
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/46 (28%), Positives = 16/46 (34%)
Frame = +1
Query: 406 PXPXXPPXKKXXXPPKXXFPPXPXXXXXXPPLXXKXXPPXGPPXXF 543
P P PP + PP PP PP + PP P +
Sbjct: 90 PTPGPPPPRNNCLPPPGPPPPCQQYQQPQPPPCQRPQPPQPQPQPY 135
>Z69360-3|CAA93286.2| 369|Caenorhabditis elegans Hypothetical
protein F25H8.5b protein.
Length = 369
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/46 (28%), Positives = 16/46 (34%)
Frame = +1
Query: 406 PXPXXPPXKKXXXPPKXXFPPXPXXXXXXPPLXXKXXPPXGPPXXF 543
P P PP + PP PP PP + PP P +
Sbjct: 90 PTPGPPPPRNNCLPPPGPPPPCQQYQQPQPPPCQRPQPPQPQPQPY 135
>Z69360-2|CAA93285.2| 780|Caenorhabditis elegans Hypothetical
protein F25H8.5a protein.
Length = 780
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/46 (28%), Positives = 16/46 (34%)
Frame = +1
Query: 406 PXPXXPPXKKXXXPPKXXFPPXPXXXXXXPPLXXKXXPPXGPPXXF 543
P P PP + PP PP PP + PP P +
Sbjct: 90 PTPGPPPPRNNCLPPPGPPPPCQQYQQPQPPPCQRPQPPQPQPQPY 135
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 29.5 bits (63), Expect = 3.4
Identities = 16/49 (32%), Positives = 18/49 (36%)
Frame = -2
Query: 520 GGXXXXKGGGXXPXXXXXXGXXFLGXXGXFXXGGXXGWGGKXXXXGGXG 374
GG +GGG G G GG GWGG+ GG G
Sbjct: 280 GGGWGQQGGGGQGGWGGPQQQQQGGWGGPQQGGGGGGWGGQGQQQGGWG 328
Score = 29.1 bits (62), Expect = 4.5
Identities = 18/62 (29%), Positives = 19/62 (30%)
Frame = -2
Query: 559 GGXXXKKXXGXPPGGXXXXKGGGXXPXXXXXXGXXFLGXXGXFXXGGXXGWGGKXXXXGG 380
GG G P GG G + G G GG GWGG GG
Sbjct: 221 GGGGGGGGWGGPAQRGGPGAYGGPGGGGQGGYGGDYGGGWGQQGGGGQGGWGGPQQQQGG 280
Query: 379 XG 374
G
Sbjct: 281 GG 282
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 29.5 bits (63), Expect = 3.4
Identities = 16/49 (32%), Positives = 18/49 (36%)
Frame = -2
Query: 520 GGXXXXKGGGXXPXXXXXXGXXFLGXXGXFXXGGXXGWGGKXXXXGGXG 374
GG +GGG G G GG GWGG+ GG G
Sbjct: 243 GGGWGQQGGGGQGGWGGPQQQQQGGWGGPQQGGGGGGWGGQGQQQGGWG 291
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 29.5 bits (63), Expect = 3.4
Identities = 16/49 (32%), Positives = 18/49 (36%)
Frame = -2
Query: 520 GGXXXXKGGGXXPXXXXXXGXXFLGXXGXFXXGGXXGWGGKXXXXGGXG 374
GG +GGG G G GG GWGG+ GG G
Sbjct: 242 GGGWGQQGGGGQGGWGGPQQQQQGGWGGPQQGGGGGGWGGQGQQQGGWG 290
Score = 29.1 bits (62), Expect = 4.5
Identities = 18/62 (29%), Positives = 19/62 (30%)
Frame = -2
Query: 559 GGXXXKKXXGXPPGGXXXXKGGGXXPXXXXXXGXXFLGXXGXFXXGGXXGWGGKXXXXGG 380
GG G P GG G + G G GG GWGG GG
Sbjct: 183 GGGGGGGGWGGPAQRGGPGAYGGPGGGGQGGYGGDYGGGWGQQGGGGQGGWGGPQQQQGG 242
Query: 379 XG 374
G
Sbjct: 243 GG 244
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 29.5 bits (63), Expect = 3.4
Identities = 16/49 (32%), Positives = 18/49 (36%)
Frame = -2
Query: 520 GGXXXXKGGGXXPXXXXXXGXXFLGXXGXFXXGGXXGWGGKXXXXGGXG 374
GG +GGG G G GG GWGG+ GG G
Sbjct: 281 GGGWGQQGGGGQGGWGGPQQQQQGGWGGPQQGGGGGGWGGQGQQQGGWG 329
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 29.5 bits (63), Expect = 3.4
Identities = 16/49 (32%), Positives = 18/49 (36%)
Frame = -2
Query: 520 GGXXXXKGGGXXPXXXXXXGXXFLGXXGXFXXGGXXGWGGKXXXXGGXG 374
GG +GGG G G GG GWGG+ GG G
Sbjct: 280 GGGWGQQGGGGQGGWGGPQQQQQGGWGGPQQGGGGGGWGGQGQQQGGWG 328
Score = 29.1 bits (62), Expect = 4.5
Identities = 18/62 (29%), Positives = 19/62 (30%)
Frame = -2
Query: 559 GGXXXKKXXGXPPGGXXXXKGGGXXPXXXXXXGXXFLGXXGXFXXGGXXGWGGKXXXXGG 380
GG G P GG G + G G GG GWGG GG
Sbjct: 221 GGGGGGGGWGGPAQRGGPGAYGGPGGGGQGGYGGDYGGGWGQQGGGGQGGWGGPQQQQGG 280
Query: 379 XG 374
G
Sbjct: 281 GG 282
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 29.5 bits (63), Expect = 3.4
Identities = 16/62 (25%), Positives = 16/62 (25%)
Frame = +1
Query: 670 PPPXXXXXPPPXXXXXXXXXXXXXXXFXPPXXPXXXXXXXXXXPPXXXXPXXXXPXXXXP 849
PPP PPP PP P PP P P P
Sbjct: 535 PPPVSSIPPPPPIAGLLAANGTNVPIPPPPPPPLPQNLSGAPPPPPPPPPMLGGPPPPPP 594
Query: 850 PP 855
PP
Sbjct: 595 PP 596
>AL110490-7|CAD59175.1| 533|Caenorhabditis elegans Hypothetical
protein Y48B6A.6b protein.
Length = 533
Score = 28.7 bits (61), Expect = 6.0
Identities = 15/46 (32%), Positives = 16/46 (34%)
Frame = +2
Query: 380 PPXXXXFXPPXXXXPPXKXPXXPQKXXSXPXPXXXXXPPPFXXXXP 517
PP PP P P PQ+ S P P PPP P
Sbjct: 256 PPPVLSIPPPPP--PNIPLPTIPQEVQSPPSPRPTSVPPPIPSPGP 299
>AL110490-6|CAB54442.2| 687|Caenorhabditis elegans Hypothetical
protein Y48B6A.6a protein.
Length = 687
Score = 28.7 bits (61), Expect = 6.0
Identities = 15/46 (32%), Positives = 16/46 (34%)
Frame = +2
Query: 380 PPXXXXFXPPXXXXPPXKXPXXPQKXXSXPXPXXXXXPPPFXXXXP 517
PP PP P P PQ+ S P P PPP P
Sbjct: 256 PPPVLSIPPPPP--PNIPLPTIPQEVQSPPSPRPTSVPPPIPSPGP 299
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 28.3 bits (60), Expect = 7.9
Identities = 19/57 (33%), Positives = 19/57 (33%), Gaps = 5/57 (8%)
Frame = +1
Query: 379 PPXXXXFXPPXPXXPPXKKXXXPPKXXF-----PPXPXXXXXXPPLXXKXXPPXGPP 534
PP F PP PP PP F PP P PP PP PP
Sbjct: 67 PPVPNGFIPP----PPGPGGIPPPPPMFAGGIPPPPPMMGGIPPPPPMFGAPPPPPP 119
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
protein C01G8.9a protein.
Length = 1724
Score = 28.3 bits (60), Expect = 7.9
Identities = 19/65 (29%), Positives = 21/65 (32%), Gaps = 5/65 (7%)
Frame = +3
Query: 381 PPXXXXXPPXPXXPP-XXKXPXXPKXFXPXXSXXXGXXPP----PFXXXXPPGGXPXXFF 545
PP PP P PP P P+ G PP P PP G P +
Sbjct: 700 PPPTSVQPPQPQQPPQGPPGPPGPQQHPGPYPGYPGYGPPGAMRPPAGFAPPPGAPYGYP 759
Query: 546 XXXPP 560
PP
Sbjct: 760 PGAPP 764
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,957,723
Number of Sequences: 27780
Number of extensions: 166121
Number of successful extensions: 1256
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2297313942
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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