Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_O14
         (1046 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   1.1  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   1.9  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 25/98 (25%), Positives = 26/98 (26%), Gaps = 2/98 (2%)
 Frame = +1

Query: 550  PPPQXXGPXXXXPPXRXXXRXXSXXXAPAXACRSAXXXPXPPXGXXXXPXXXSGXXXPSP 729
            P P    P    P         S    P  A   A   P P       P   SG   P P
Sbjct: 1124 PKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIP-PVP 1182

Query: 730  XXXGXXPPXXPQXQGEXXPX-RXXXPAXPP-RXPXPVP 837
                  PP  P  +    P      P  PP     PVP
Sbjct: 1183 KPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVP 1220


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 25/98 (25%), Positives = 27/98 (27%), Gaps = 2/98 (2%)
 Frame = +1

Query: 550 PPPQXXGPXXXXPPXRXXXRXXSXXXAPAXACRSAXXXPXPPXGXXXXPXXXSGXXXPS- 726
           PPP+        PP     R  S   AP  A         PP G             PS 
Sbjct: 364 PPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSL 423

Query: 727 -PXXXGXXPPXXPQXQGEXXPXRXXXPAXPPRXPXPVP 837
            P      PP  P       P     P   P  P P+P
Sbjct: 424 PPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAP-PLP 460


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,337,519
Number of Sequences: 5004
Number of extensions: 10879
Number of successful extensions: 15
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 549226150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)