Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_O14
         (1046 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0686 - 30900748-30902167,30903442-30904742                       36   0.053
12_02_1174 - 26696869-26698191                                         33   0.28 
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121...    32   0.87 
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076           31   1.1  
01_06_0146 + 26969011-26969995,26970878-26970930                       29   4.6  

>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 35.9 bits (79), Expect = 0.053
 Identities = 26/97 (26%), Positives = 30/97 (30%)
 Frame = +1

Query: 547 APPPQXXGPXXXXPPXRXXXRXXSXXXAPAXACRSAXXXPXPPXGXXXXPXXXSGXXXPS 726
           A  P    P    PP R          A A A  S    P PP      P   +    P 
Sbjct: 278 AARPASPSPSLPLPPGRESPSRPQSIAAAAVA--SPAPPPPPP------PKPAAAAPPPP 329

Query: 727 PXXXGXXPPXXPQXQGEXXPXRXXXPAXPPRXPXPVP 837
           P      PP  P+      P +   P  PP+ P P P
Sbjct: 330 PPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPP 366



 Score = 28.7 bits (61), Expect = 8.1
 Identities = 12/43 (27%), Positives = 16/43 (37%)
 Frame = +1

Query: 721 PSPXXXGXXPPXXPQXQGEXXPXRXXXPAXPPRXPXPVPXLRG 849
           P P      PP  P+      P +   P  P + P P P  +G
Sbjct: 319 PKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKG 361


>12_02_1174 - 26696869-26698191
          Length = 440

 Score = 33.5 bits (73), Expect = 0.28
 Identities = 24/96 (25%), Positives = 25/96 (26%)
 Frame = +1

Query: 550 PPPQXXGPXXXXPPXRXXXRXXSXXXAPAXACRSAXXXPXPPXGXXXXPXXXSGXXXPSP 729
           PPP    P    PP     R  +    PA         P PP      P        P P
Sbjct: 212 PPPTLPPPSPPPPPPTVPPR--TPGDTPAVVEPKPQPPPPPPRAPVKMPRVLEPKPSPPP 269

Query: 730 XXXGXXPPXXPQXQGEXXPXRXXXPAXPPRXPXPVP 837
                 PP          P     P  PP  P P P
Sbjct: 270 PSPLPPPPEDYWSPTAVTPPEPTKPKPPPPSPPPPP 305


>10_01_0100 +
           1209424-1209538,1210373-1211073,1211158-1211379,
           1211452-1211878,1212091-1213219,1213623-1213746,
           1214207-1214278,1215480-1215578,1215617-1215640,
           1215704-1215745,1215815-1215895,1215983-1216114,
           1216115-1216196,1216271-1216365,1218499-1218570,
           1218676-1218792,1219379-1219447,1219521-1219587,
           1219886-1220025
          Length = 1269

 Score = 31.9 bits (69), Expect = 0.87
 Identities = 27/108 (25%), Positives = 31/108 (28%), Gaps = 8/108 (7%)
 Frame = +1

Query: 550 PPPQXXGPXXXXP-PXRXXXRXXSXXXAPAXACRSAXXXPXPPXGXXXXPXXXSGXXXPS 726
           PPP   G     P P        S    P  A  S+   P PP          +G   PS
Sbjct: 651 PPPPAPGIGNKFPAPPPPPPPPRSSSRTPTGAATSSKGPPPPPPPPLPPANRTNGPGVPS 710

Query: 727 PXXXGXXPPXXPQXQGEXXPXRXXXPAXP-------PRXPXPVPXLRG 849
                  PP   +  G   P     P  P       P  P P P + G
Sbjct: 711 APPPPPPPPPANRSNGPSAPAPPLPPPLPAAANKRNPPAPPPPPLMTG 758


>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
          Length = 906

 Score = 31.5 bits (68), Expect = 1.1
 Identities = 35/144 (24%), Positives = 37/144 (25%), Gaps = 7/144 (4%)
 Frame = +1

Query: 547 APPPQXXGPXXXXPPXRXXXRXXSXXXAP-------AXACRSAXXXPXPPXGXXXXPXXX 705
           APPP    P    PP             P            +    P PP      P   
Sbjct: 275 APPPPAGPPPPAPPPLPPSHHHHHGHHPPPPHPLPPGAGAGAGTGAPPPPPAHPAAPAPP 334

Query: 706 SGXXXPSPXXXGXXPPXXPQXQGEXXPXRXXXPAXPPRXPXPVPXLRGXXGXGGXXXXLV 885
                PS    G  PP  P       P     P  P   P P P   G  G GG     +
Sbjct: 335 PPAPSPSAAGAGSGPPPPPPPAAPAAP----RPPGPGPGPPPPPGAAG-RGGGGPPPPAL 389

Query: 886 PXXXXXGGXVFXFXPPRFXMGXGA 957
           P      G      PP F    GA
Sbjct: 390 PGGPRARG------PPPFKKSPGA 407


>01_06_0146 + 26969011-26969995,26970878-26970930
          Length = 345

 Score = 29.5 bits (63), Expect = 4.6
 Identities = 23/94 (24%), Positives = 24/94 (25%)
 Frame = +1

Query: 550 PPPQXXGPXXXXPPXRXXXRXXSXXXAPAXACRSAXXXPXPPXGXXXXPXXXSGXXXPSP 729
           PPP    P    PP             PA A  +A   P P           S    P P
Sbjct: 23  PPPPTPHPATDPPPISPQNPTPPPPPLPASA--AAPTTPSPNHSGDPSRPIPSQAPAPPP 80

Query: 730 XXXGXXPPXXPQXQGEXXPXRXXXPAXPPRXPXP 831
                  P  P       P     PA  P  P P
Sbjct: 81  PPTADPSPPLPHDNRTPQPRAAPPPAPAPDQPAP 114


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,837,289
Number of Sequences: 37544
Number of extensions: 201176
Number of successful extensions: 522
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3094456940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)