Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP19_F_O12
(719 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0005 + 11568545-11569119,11569179-11569191 28 0.055
05_01_0364 + 2855760-2855801,2855940-2856015,2856759-2857747 31 0.92
11_02_0065 - 7938007-7938393,7939292-7939435,7940597-7940665,794... 31 1.2
01_01_0796 + 6190931-6192745 31 1.2
01_01_0083 + 631196-631675 30 1.6
05_02_0048 - 6066921-6067541 29 2.8
07_03_1136 + 24218601-24218734,24218769-24219906 29 4.9
01_01_0892 + 7037384-7037795,7038447-7038962,7039507-7039593,703... 29 4.9
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866... 28 6.5
09_06_0125 - 21011757-21012428 28 6.5
07_01_0974 + 8211602-8212051 28 8.6
03_03_0139 + 14769393-14769764,14770113-14770193,14770537-14770737 28 8.6
>01_03_0005 + 11568545-11569119,11569179-11569191
Length = 195
Score = 28.3 bits (60), Expect(2) = 0.055
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +1
Query: 619 PPPXGGGGGXXXXKKKXXXGGG 684
PPP GGGGG ++ GGG
Sbjct: 114 PPPTGGGGGGGGGWQQGGGGGG 135
Score = 27.9 bits (59), Expect = 8.6
Identities = 22/73 (30%), Positives = 24/73 (32%), Gaps = 4/73 (5%)
Frame = -1
Query: 686 PPPPXXXFFFXXXXPPPP--PXGGGXXXXXXXXXXXXXFXGXKNXFXXKKPPXFXXXGGX 513
PPPP PPPP P GGG G PP + GG
Sbjct: 56 PPPPPPVVTPTPQCPPPPSYPSGGG------------GGGGGGTVMYTSPPPPYSGGGGG 103
Query: 512 KKXGGE--XFPPP 480
GG +PPP
Sbjct: 104 SSTGGGGIYYPPP 116
Score = 25.8 bits (54), Expect(2) = 0.055
Identities = 11/32 (34%), Positives = 14/32 (43%)
Frame = +1
Query: 409 GGPPPLXKRXXPPFXGPGXFXXXXGGGXFSPP 504
GG + PP+ G G GGG + PP
Sbjct: 84 GGGTVMYTSPPPPYSGGGGGSSTGGGGIYYPP 115
>05_01_0364 + 2855760-2855801,2855940-2856015,2856759-2857747
Length = 368
Score = 31.1 bits (67), Expect = 0.92
Identities = 16/32 (50%), Positives = 17/32 (53%), Gaps = 4/32 (12%)
Frame = +1
Query: 604 GKKXXPPPX----GGGGGXXXXKKKXXXGGGG 687
GK+ PP GGGGG KKK GGGG
Sbjct: 197 GKQPVAPPGNGNGGGGGGGGGGKKKGKKGGGG 228
>11_02_0065 -
7938007-7938393,7939292-7939435,7940597-7940665,
7940762-7940809,7941488-7941584,7941688-7941767,
7941841-7941912,7942256-7942350,7943903-7943984,
7945176-7945209,7945255-7945262,7945657-7946058
Length = 505
Score = 30.7 bits (66), Expect = 1.2
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -1
Query: 686 PPPPXXXFFFXXXXPPPPP 630
PPPP FF PPPPP
Sbjct: 67 PPPPPAAFFAAVPPPPPPP 85
>01_01_0796 + 6190931-6192745
Length = 604
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = -3
Query: 684 PPPXXXFFFXXXXPPPPPXXGGGXFFPXXKNPP 586
PPP F PPPPP GG + P PP
Sbjct: 229 PPP---FVADQPPPPPPPAAGGSLWIPELPPPP 258
>01_01_0083 + 631196-631675
Length = 159
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +1
Query: 619 PPPXGGGGGXXXXKKKXXXGGGG 687
PPP GGGGG + GGGG
Sbjct: 78 PPPQGGGGGYIPYYQPPAGGGGG 100
>05_02_0048 - 6066921-6067541
Length = 206
Score = 29.5 bits (63), Expect = 2.8
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -3
Query: 645 PPPPPXXGGGXFFPXXK 595
PPPPP GGG + P K
Sbjct: 114 PPPPPAAGGGGYMPAAK 130
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 28.7 bits (61), Expect = 4.9
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +1
Query: 619 PPPXGGGGGXXXXKKKXXXGGGG 687
PP GGGGG ++ GGGG
Sbjct: 132 PPAPGGGGGGGAPRRVLGGGGGG 154
Score = 28.3 bits (60), Expect = 6.5
Identities = 14/39 (35%), Positives = 15/39 (38%)
Frame = +1
Query: 571 PXKKXGGVFXXGKKXXPPPXGGGGGXXXXKKKXXXGGGG 687
P G G P P GGGGG + GGGG
Sbjct: 117 PPSLPPGAGGGGGARPPAPGGGGGGGAPRRVLGGGGGGG 155
Score = 28.3 bits (60), Expect = 6.5
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +1
Query: 622 PPXGGGGGXXXXKKKXXXGGGG 687
PP GGGGG + GGGG
Sbjct: 172 PPGGGGGGGGPGRAPGGGGGGG 193
>01_01_0892 +
7037384-7037795,7038447-7038962,7039507-7039593,
7039698-7039768,7040148-7040224,7040380-7040527,
7040973-7041134,7041374-7041694
Length = 597
Score = 28.7 bits (61), Expect = 4.9
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -1
Query: 686 PPPPXXXFFFXXXXPPPPP 630
PPPP ++ PPPPP
Sbjct: 114 PPPPHLLHYYGHPPPPPPP 132
>09_06_0277 -
21983049-21983080,21983250-21984788,21986619-21986655,
21987612-21987665,21987781-21987893,21988272-21988660,
21988783-21988903,21989245-21989342,21989963-21990153
Length = 857
Score = 28.3 bits (60), Expect = 6.5
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -3
Query: 645 PPPPPXXGGGXFFPXXKNPPXF 580
PPP P GGG + P PP +
Sbjct: 738 PPPGPPGGGGGYLPPVVFPPPY 759
>09_06_0125 - 21011757-21012428
Length = 223
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = -1
Query: 686 PPPPXXXFFFXXXXPPPPPXGGG 618
PPPP F PPPPP G G
Sbjct: 173 PPPPRAPFL---APPPPPPVGSG 192
>07_01_0974 + 8211602-8212051
Length = 149
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/33 (36%), Positives = 14/33 (42%)
Frame = -3
Query: 684 PPPXXXFFFXXXXPPPPPXXGGGXFFPXXKNPP 586
PPP F+ PPP GGG +PP
Sbjct: 37 PPPLVQQFYYYSPPPPSSPVGGGGTGGGGPSPP 69
>03_03_0139 + 14769393-14769764,14770113-14770193,14770537-14770737
Length = 217
Score = 27.9 bits (59), Expect = 8.6
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +1
Query: 631 GGGGGXXXXKKKXXXGGGG 687
GGGGG KK+ GGGG
Sbjct: 7 GGGGGGIAGKKRKAVGGGG 25
Score = 27.9 bits (59), Expect = 8.6
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +1
Query: 631 GGGGGXXXXKKKXXXGGGG 687
GGGGG K+K GGGG
Sbjct: 8 GGGGGIAGKKRKAVGGGGG 26
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,892,624
Number of Sequences: 37544
Number of extensions: 463751
Number of successful extensions: 2305
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1640
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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