Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP19_F_O11
(918 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 30 0.073
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 0.10
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 30 0.40
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 0.56
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 27 4.9
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 4.9
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 27 4.9
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 27 4.9
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 8.6
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 30.3 bits (65), Expect(2) = 0.073
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -3
Query: 886 PPPPPPPXPXXGGGG 842
PPPPPPP P GG
Sbjct: 775 PPPPPPPPPAVSAGG 789
Score = 29.9 bits (64), Expect = 0.53
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -3
Query: 889 PPPPPPPPXPXXGGG 845
PPPPPPPP GG
Sbjct: 775 PPPPPPPPPAVSAGG 789
Score = 27.9 bits (59), Expect = 2.1
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = +3
Query: 834 PPPPPPPXXGXGGGGGGGGXXXXXXPPP 917
PPPPPPP G G G PPP
Sbjct: 761 PPPPPPPP-----GVAGAGPPPPPPPPP 783
Score = 27.5 bits (58), Expect = 2.8
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = -1
Query: 888 PPPPPPPPXXXXGG 847
PPPPPPPP G
Sbjct: 761 PPPPPPPPGVAGAG 774
Score = 27.5 bits (58), Expect(2) = 0.45
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = -3
Query: 883 PPPPPPXPXXGGGG 842
PPPPPP P G G
Sbjct: 761 PPPPPPPPGVAGAG 774
Score = 27.5 bits (58), Expect = 2.8
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = +3
Query: 834 PPPPPPPXXGXGGGG 878
PPPPPPP GG
Sbjct: 775 PPPPPPPPPAVSAGG 789
Score = 27.1 bits (57), Expect = 3.7
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = -3
Query: 889 PPPPPPPPXPXXGG 848
PPPPPPPP G
Sbjct: 761 PPPPPPPPGVAGAG 774
Score = 27.1 bits (57), Expect = 3.7
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = -1
Query: 885 PPPPPPPXXXXGGGG 841
PPPPPPP GG
Sbjct: 775 PPPPPPPPPAVSAGG 789
Score = 23.4 bits (48), Expect(2) = 5.8
Identities = 8/15 (53%), Positives = 8/15 (53%)
Frame = -3
Query: 880 PPPPPXPXXGGGGGG 836
PPPPP P GG
Sbjct: 775 PPPPPPPPPAVSAGG 789
Score = 21.0 bits (42), Expect(2) = 0.073
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = -3
Query: 889 PPPPPP 872
PPPPPP
Sbjct: 732 PPPPPP 737
Score = 21.0 bits (42), Expect(2) = 0.45
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = -3
Query: 886 PPPPPP 869
PPPPPP
Sbjct: 732 PPPPPP 737
Score = 21.0 bits (42), Expect(2) = 5.8
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = -3
Query: 883 PPPPPP 866
PPPPPP
Sbjct: 732 PPPPPP 737
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 28.7 bits (61), Expect = 1.2
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +3
Query: 834 PPPPPPPXXGXGGGGGGGGXXXXXXPPP 917
PPPPPP G G G PPP
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPP 339
Score = 26.2 bits (55), Expect(2) = 0.10
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = -3
Query: 916 GGGXXXXXXPPPPPPP 869
G G PPPPPPP
Sbjct: 328 GNGSSNSSLPPPPPPP 343
Score = 24.6 bits (51), Expect(2) = 0.10
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = -3
Query: 886 PPPPPPPXPXXGG 848
PPPPPPP G
Sbjct: 337 PPPPPPPRSNAAG 349
Score = 23.8 bits (49), Expect(2) = 2.3
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -3
Query: 889 PPPPPPP 869
PPPPPPP
Sbjct: 311 PPPPPPP 317
Score = 22.2 bits (45), Expect(2) = 2.3
Identities = 7/13 (53%), Positives = 7/13 (53%)
Frame = -3
Query: 880 PPPPPXPXXGGGG 842
PPPPP P G
Sbjct: 337 PPPPPPPRSNAAG 349
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 30.3 bits (65), Expect = 0.40
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -3
Query: 886 PPPPPPPXPXXGGGGG 839
PPPPPPP P GG
Sbjct: 945 PPPPPPPPPLVSAAGG 960
Score = 29.5 bits (63), Expect = 0.70
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -3
Query: 889 PPPPPPPPXPXXGGG 845
PPPPPPPP GG
Sbjct: 946 PPPPPPPPLVSAAGG 960
Score = 29.1 bits (62), Expect = 0.92
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -3
Query: 889 PPPPPPPPXPXXGGGG 842
PPPPPPPP GG
Sbjct: 945 PPPPPPPPPLVSAAGG 960
Score = 27.5 bits (58), Expect = 2.8
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +3
Query: 834 PPPPPPPXXGXGGG 875
PPPPPPP GG
Sbjct: 947 PPPPPPPLVSAAGG 960
Score = 27.1 bits (57), Expect = 3.7
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = -1
Query: 885 PPPPPPPXXXXGGGGG 838
PPPPPPP GG
Sbjct: 945 PPPPPPPPPLVSAAGG 960
Score = 26.2 bits (55), Expect = 6.5
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = +3
Query: 834 PPPPPPPXXGXGGGG 878
PPPPPPP GG
Sbjct: 946 PPPPPPPPLVSAAGG 960
Score = 25.8 bits (54), Expect = 8.6
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -3
Query: 889 PPPPPPPPXP 860
P PPPPPP P
Sbjct: 905 PTPPPPPPLP 914
Score = 25.8 bits (54), Expect = 8.6
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +3
Query: 834 PPPPPPPXXGXGGGGG 881
PPPPPPP GG
Sbjct: 945 PPPPPPPPPLVSAAGG 960
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.6 bits (56), Expect(2) = 0.56
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 889 PPPPPPPP 866
PPPPPPPP
Sbjct: 9 PPPPPPPP 16
Score = 26.6 bits (56), Expect = 4.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 888 PPPPPPPP 865
PPPPPPPP
Sbjct: 9 PPPPPPPP 16
Score = 21.4 bits (43), Expect(2) = 0.56
Identities = 7/12 (58%), Positives = 7/12 (58%)
Frame = -3
Query: 886 PPPPPPPXPXXG 851
PP PPP P G
Sbjct: 20 PPSQPPPPPPPG 31
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 26.6 bits (56), Expect = 4.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 889 PPPPPPPP 866
PPPPPPPP
Sbjct: 306 PPPPPPPP 313
Score = 26.6 bits (56), Expect = 4.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 888 PPPPPPPP 865
PPPPPPPP
Sbjct: 306 PPPPPPPP 313
Score = 26.6 bits (56), Expect = 4.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 889 PPPPPPPP 866
PPPPPPPP
Sbjct: 307 PPPPPPPP 314
Score = 26.6 bits (56), Expect = 4.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 888 PPPPPPPP 865
PPPPPPPP
Sbjct: 307 PPPPPPPP 314
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.6 bits (56), Expect = 4.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 889 PPPPPPPP 866
PPPPPPPP
Sbjct: 189 PPPPPPPP 196
Score = 26.6 bits (56), Expect = 4.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 888 PPPPPPPP 865
PPPPPPPP
Sbjct: 189 PPPPPPPP 196
Score = 26.6 bits (56), Expect = 4.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 889 PPPPPPPP 866
PPPPPPPP
Sbjct: 190 PPPPPPPP 197
Score = 26.6 bits (56), Expect = 4.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 888 PPPPPPPP 865
PPPPPPPP
Sbjct: 190 PPPPPPPP 197
Score = 25.8 bits (54), Expect = 8.6
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -3
Query: 889 PPPPPPPPXP 860
PPPPPPP P
Sbjct: 238 PPPPPPPTLP 247
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 26.6 bits (56), Expect = 4.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 889 PPPPPPPP 866
PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102
Score = 26.6 bits (56), Expect = 4.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 888 PPPPPPPP 865
PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 26.6 bits (56), Expect = 4.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 889 PPPPPPPP 866
PPPPPPPP
Sbjct: 370 PPPPPPPP 377
Score = 26.6 bits (56), Expect = 4.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 888 PPPPPPPP 865
PPPPPPPP
Sbjct: 370 PPPPPPPP 377
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 25.8 bits (54), Expect = 8.6
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -3
Query: 889 PPPPPPPPXP 860
P PPPPPP P
Sbjct: 3 PAPPPPPPAP 12
Score = 25.8 bits (54), Expect = 8.6
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -3
Query: 889 PPPPPPPPXP 860
PPPPPP P P
Sbjct: 5 PPPPPPAPAP 14
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,578,749
Number of Sequences: 5004
Number of extensions: 20678
Number of successful extensions: 396
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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