Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP19_F_O10
(954 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF125462-6|AAD12857.2| 239|Caenorhabditis elegans Hypothetical ... 259 2e-69
AF125965-1|AAL38962.1| 339|Caenorhabditis elegans Hypothetical ... 51 1e-06
Z22179-6|CAA80163.2| 165|Caenorhabditis elegans Hypothetical pr... 30 2.1
Z71259-6|CAA95792.1| 328|Caenorhabditis elegans Hypothetical pr... 29 6.5
U28741-7|AAO38645.1| 721|Caenorhabditis elegans Synapse defecti... 28 8.6
U28741-6|AAO21428.1| 942|Caenorhabditis elegans Synapse defecti... 28 8.6
U28741-5|AAO38644.1| 987|Caenorhabditis elegans Synapse defecti... 28 8.6
AF546880-1|AAN38752.1| 942|Caenorhabditis elegans axon identity... 28 8.6
>AF125462-6|AAD12857.2| 239|Caenorhabditis elegans Hypothetical
protein Y66H1A.2 protein.
Length = 239
Score = 259 bits (634), Expect = 2e-69
Identities = 125/191 (65%), Positives = 145/191 (75%), Gaps = 1/191 (0%)
Frame = +2
Query: 218 KYSILLPTYNERENLPIIIWLIIKYLDESGVDYEVIIIDDGSPDGTSEVARQLQKLYGSS 397
KYSI+LPTYNE+ENLPI IWLI YL E V +EVII+DD SPDGT +A+ LQK YG
Sbjct: 6 KYSIILPTYNEKENLPICIWLIENYLKE--VSHEVIIVDDASPDGTQGIAKLLQKEYGDD 63
Query: 398 KIVLRPREMKLGLGTAYIHGIQQASGNFIIIMDADLSHHPKFIPEFIKLQLKYDYDIVSG 577
KI+++PR KLGLGTAY HG+ A G FII+MDADLSHHPKFIPE I LQ KY DIV+G
Sbjct: 64 KILIKPRVGKLGLGTAYSHGLSFARGEFIILMDADLSHHPKFIPEMIALQHKYKLDIVTG 123
Query: 578 TRYKGSGGVYGWDFKRKLISRGANFLTQLMLRPGVSDLTGSFRLYKKEALEKLILSCVLR 757
TRYK GGV GWD KRK IS+GANFL Q +L PGVSDLTGSFRLYK++ L KLI V +
Sbjct: 124 TRYKDGGGVSGWDLKRKTISKGANFLAQFLLNPGVSDLTGSFRLYKRDILSKLIAESVSK 183
Query: 758 -FXMSSQMFWR 787
+ +M +R
Sbjct: 184 GYVFQMEMMFR 194
>AF125965-1|AAL38962.1| 339|Caenorhabditis elegans Hypothetical
protein H43I07.3 protein.
Length = 339
Score = 51.2 bits (117), Expect = 1e-06
Identities = 33/100 (33%), Positives = 54/100 (54%), Gaps = 7/100 (7%)
Frame = +2
Query: 224 SILLPTYNERENLPIIIWLIIKYLD-----ESGVDYEVIIIDDGSPDGTSEVARQLQKLY 388
S+++P NE E + I++ YL+ + YE+I++DDGS D T+++ Q+
Sbjct: 84 SVIIPAMNEVERIEIMLDDCCDYLEARAEKDKDFTYEIIVVDDGSTDETADIVVQI---- 139
Query: 389 GSSKIVLRPREMKL--GLGTAYIHGIQQASGNFIIIMDAD 502
G+ + LR +MK G G A G+ +SG I+ DAD
Sbjct: 140 GARRQNLRVLKMKANRGKGGAVKMGVLHSSGKLILFADAD 179
>Z22179-6|CAA80163.2| 165|Caenorhabditis elegans Hypothetical
protein F58A4.6 protein.
Length = 165
Score = 30.3 bits (65), Expect = 2.1
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = -3
Query: 523 ELWMMAQIRIHYNNKISRSLLYPMNVGSSETKLHLA---RSKHYFRGAIELLQL 371
E + AQIR YN + + LL + V + L A R KH+FR ++L +L
Sbjct: 39 EEYSFAQIRAFYNIPVDKKLLVNIQVKNPAQNLDYAWERRLKHHFRYMLDLEKL 92
>Z71259-6|CAA95792.1| 328|Caenorhabditis elegans Hypothetical
protein F13G3.6 protein.
Length = 328
Score = 28.7 bits (61), Expect = 6.5
Identities = 23/112 (20%), Positives = 45/112 (40%), Gaps = 2/112 (1%)
Frame = +2
Query: 224 SILLPTYNERENLPIIIWLIIKYLDESGVDYEVIIIDDGSPDGTSEVARQLQKLYGSS-- 397
S+++P N + L + ++ E+ + DDGS D T + + +
Sbjct: 9 SVIIPAKNVEKFLRETLNGLLDQTACENSKIEICLADDGSVDDTVRILENARLEFEEMGM 68
Query: 398 KIVLRPREMKLGLGTAYIHGIQQASGNFIIIMDADLSHHPKFIPEFIKLQLK 553
+V+ G+G A ++ + G ++ DAD P I ++L K
Sbjct: 69 NVVVTHVPQPGGVGAAKDCAVRSSKGRYLCFNDADDVSSPNRIKSQLELATK 120
>U28741-7|AAO38645.1| 721|Caenorhabditis elegans Synapse defective
protein 1, isoformc protein.
Length = 721
Score = 28.3 bits (60), Expect = 8.6
Identities = 12/44 (27%), Positives = 26/44 (59%)
Frame = +2
Query: 248 ERENLPIIIWLIIKYLDESGVDYEVIIIDDGSPDGTSEVARQLQ 379
ER + PI++ +I+ +++ GVDY + + GS + + +L+
Sbjct: 498 ERRDTPIVLTRLIQEIEKRGVDYSGLYVLCGSVEKKKMLRAELE 541
>U28741-6|AAO21428.1| 942|Caenorhabditis elegans Synapse defective
protein 1, isoformb protein.
Length = 942
Score = 28.3 bits (60), Expect = 8.6
Identities = 12/44 (27%), Positives = 26/44 (59%)
Frame = +2
Query: 248 ERENLPIIIWLIIKYLDESGVDYEVIIIDDGSPDGTSEVARQLQ 379
ER + PI++ +I+ +++ GVDY + + GS + + +L+
Sbjct: 696 ERRDTPIVLTRLIQEIEKRGVDYSGLYVLCGSVEKKKMLRAELE 739
>U28741-5|AAO38644.1| 987|Caenorhabditis elegans Synapse defective
protein 1, isoforma protein.
Length = 987
Score = 28.3 bits (60), Expect = 8.6
Identities = 12/44 (27%), Positives = 26/44 (59%)
Frame = +2
Query: 248 ERENLPIIIWLIIKYLDESGVDYEVIIIDDGSPDGTSEVARQLQ 379
ER + PI++ +I+ +++ GVDY + + GS + + +L+
Sbjct: 764 ERRDTPIVLTRLIQEIEKRGVDYSGLYVLCGSVEKKKMLRAELE 807
>AF546880-1|AAN38752.1| 942|Caenorhabditis elegans axon identity
specification proteinSYD-1 protein.
Length = 942
Score = 28.3 bits (60), Expect = 8.6
Identities = 12/44 (27%), Positives = 26/44 (59%)
Frame = +2
Query: 248 ERENLPIIIWLIIKYLDESGVDYEVIIIDDGSPDGTSEVARQLQ 379
ER + PI++ +I+ +++ GVDY + + GS + + +L+
Sbjct: 696 ERRDTPIVLTRLIQEIEKRGVDYSGLYVLCGSVEKKKMLRAELE 739
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,595,151
Number of Sequences: 27780
Number of extensions: 302067
Number of successful extensions: 653
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2475644248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -