Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_O06
         (1028 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    28   2.5  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   3.2  

>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = +2

Query: 839 GGXXPPPPPPP 871
           GG  PPPPPPP
Sbjct: 303 GGLPPPPPPPP 313


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +2

Query: 833 GXGGXXPPPPPPP 871
           G  G  PPPPPPP
Sbjct: 769 GVAGAGPPPPPPP 781



 Score = 26.6 bits (56), Expect = 5.7
 Identities = 15/51 (29%), Positives = 15/51 (29%)
 Frame = -3

Query: 804 PPPPPXXXXXXFFXXXKKXXKXXXXXXGGGGXXPPPXXFFFXXXXXPPPPP 652
           PPPPP                      GG    PPP          PPPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 26.6 bits (56), Expect = 5.7
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -3

Query: 855 GGXXPPXPXXXXXXXXXPPPPP 790
           GG  PP P         PPPPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPP 780



 Score = 25.8 bits (54), Expect = 9.9
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = -3

Query: 858 GGGXXPPXPXXXXXXXXXPPPPP 790
           GG   PP P         PPPPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPP 781


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,098,031
Number of Sequences: 5004
Number of extensions: 29735
Number of successful extensions: 146
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 537243034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)