Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_O01
         (968 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.75 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   2.3  
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    26   6.9  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   9.2  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.5 bits (63), Expect = 0.75
 Identities = 14/40 (35%), Positives = 14/40 (35%)
 Frame = +1

Query: 685 PPPPPXXSXLXXSXGXXXGXGXXXPPPPPXPXGGXXXXPP 804
           PPPPP  S    S           PPPPP         PP
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPP 377



 Score = 26.6 bits (56), Expect = 5.3
 Identities = 17/52 (32%), Positives = 18/52 (34%), Gaps = 3/52 (5%)
 Frame = +1

Query: 631 PPXGGVVXXSLXXXXXXXPPPPPXXSXLXXSXGXXXGXG---XXXPPPPPXP 777
           PP    V  +        PPPPP  S          G G      PPPPP P
Sbjct: 293 PPPSSRVSAAALAANKKRPPPPPPPSRRNRGK-PPIGNGSSNSSLPPPPPPP 343


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 14/49 (28%), Positives = 16/49 (32%)
 Frame = +1

Query: 631 PPXGGVVXXSLXXXXXXXPPPPPXXSXLXXSXGXXXGXGXXXPPPPPXP 777
           PP   V+  +        PPP P               G   PPPPP P
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 26.6 bits (56), Expect = 5.3
 Identities = 11/31 (35%), Positives = 11/31 (35%)
 Frame = +3

Query: 684 PPSPPXXXXSPXXXXXXXXXGXXXXPPPPPP 776
           PP  P     P         G    PPPPPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782


>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 513

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = -3

Query: 300 PPPPPPXXXPPPXGQKXXXKP 238
           PPPPPP    P  G+     P
Sbjct: 240 PPPPPPRPSQPTSGESQNTNP 260


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 12/38 (31%), Positives = 12/38 (31%)
 Frame = +1

Query: 688  PPPPXXSXLXXSXGXXXGXGXXXPPPPPXPXGGXXXXP 801
            PPPP  S            G    PPPP P       P
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVP 1744


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,754,132
Number of Sequences: 5004
Number of extensions: 23331
Number of successful extensions: 183
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 497299314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)