Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_N24
         (952 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   1.7  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   5.4  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   5.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   5.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   7.1  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.0 bits (42), Expect(2) = 1.7
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = -3

Query: 821  PPPPPP 804
            PPPPPP
Sbjct: 1355 PPPPPP 1360



 Score = 21.0 bits (42), Expect(2) = 1.7
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = -1

Query: 820  PPPPPP 803
            PPPPPP
Sbjct: 1355 PPPPPP 1360



 Score = 21.0 bits (42), Expect(2) = 1.7
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = -3

Query: 821  PPPPPP 804
            PPPPPP
Sbjct: 1356 PPPPPP 1361



 Score = 21.0 bits (42), Expect(2) = 1.7
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = -3

Query: 740  PPPPPP 723
            PPPPPP
Sbjct: 1356 PPPPPP 1361



 Score = 21.0 bits (42), Expect(2) = 1.7
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = -1

Query: 739  PPPPPP 722
            PPPPPP
Sbjct: 1356 PPPPPP 1361



 Score = 21.0 bits (42), Expect(2) = 1.7
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = -3

Query: 740  PPPPPP 723
            PPPPPP
Sbjct: 1357 PPPPPP 1362


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -2

Query: 822 APPPPPP 802
           APPPPPP
Sbjct: 342 APPPPPP 348


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 11/32 (34%), Positives = 11/32 (34%)
 Frame = +3

Query: 726 GGGGGXXXXXPXPXGGGGXXXXXXXXGGGGGG 821
           GG G            GG        GGGGGG
Sbjct: 20  GGPGSSSAGGVVTGASGGSIVVGANNGGGGGG 51


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -2

Query: 831  GGXAPPPPPP 802
            G   PPPPPP
Sbjct: 1855 GSPEPPPPPP 1864


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 7.1
 Identities = 11/33 (33%), Positives = 11/33 (33%)
 Frame = -1

Query: 826 GXPPPPPPXXXXXXXXPPPPXGXGXXXXXPPPP 728
           G P PP P        PP P   G     P  P
Sbjct: 414 GAPMPPIPNMSNMSGMPPLPNMPGSMPTMPTMP 446


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,290
Number of Sequences: 438
Number of extensions: 7516
Number of successful extensions: 29
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31202262
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)