Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_N23
         (941 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical pr...    31   1.6  
AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    30   2.8  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    30   2.8  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    30   2.8  

>Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical
           protein E02A10.2 protein.
          Length = 385

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 16/42 (38%), Positives = 16/42 (38%)
 Frame = +1

Query: 658 GGGGGXXFFFFXXPPPPXXGGXSXXPXXGFXXXXXXXGXGGG 783
           GGGGG        PPPP  GG       G        G GGG
Sbjct: 43  GGGGGCGGGCAPPPPPPACGGGCGGGGGGCGGGGGGCGGGGG 84



 Score = 28.3 bits (60), Expect = 8.4
 Identities = 15/41 (36%), Positives = 15/41 (36%)
 Frame = +1

Query: 658 GGGGGXXFFFFXXPPPPXXGGXSXXPXXGFXXXXXXXGXGG 780
           GGGGG        PPPP  GG       G        G GG
Sbjct: 100 GGGGGCGGGCAPPPPPPACGGGCGGGGGGCGGGCGGGGGGG 140


>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 14/42 (33%), Positives = 15/42 (35%)
 Frame = -1

Query: 782 PPPXPXXXXXXXXPXXGXXEXPPXXGGGGXXKKKKXXPPPPP 657
           PPP P        P  G    PP    G     +   PPPPP
Sbjct: 237 PPPPPPPKGSP--PLAGSGSPPPPPAAGSPPPPRTGSPPPPP 276


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 14/42 (33%), Positives = 15/42 (35%)
 Frame = -1

Query: 782 PPPXPXXXXXXXXPXXGXXEXPPXXGGGGXXKKKKXXPPPPP 657
           PPP P        P  G    PP    G     +   PPPPP
Sbjct: 258 PPPPPPPKGSP--PLAGSGSPPPPPAAGSPPPPRTGSPPPPP 297


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 14/42 (33%), Positives = 15/42 (35%)
 Frame = -1

Query: 782 PPPXPXXXXXXXXPXXGXXEXPPXXGGGGXXKKKKXXPPPPP 657
           PPP P        P  G    PP    G     +   PPPPP
Sbjct: 243 PPPPPPPKGSP--PLAGSGSPPPPPAAGSPPPPRTGSPPPPP 282


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,275,662
Number of Sequences: 27780
Number of extensions: 197882
Number of successful extensions: 358
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 281
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2433684176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)