Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP19_F_N22
(915 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22H12.01c |mug35|SPAC23G3.13c|sequence orphan|Schizosaccharo... 30 0.53
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr... 30 0.53
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 29 1.2
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb... 28 1.6
SPBC1921.07c ||SPBC21D10.13|SAGA complex subunit Sgf29 |Schizosa... 28 1.6
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 28 2.1
SPAC15E1.10 ||SPAP7G5.01|PI31 proteasome regulator related|Schiz... 27 2.8
SPAC27F1.04c |nuf2||spindle pole body protein Nuf2|Schizosacchar... 26 8.6
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|... 26 8.6
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 26 8.6
>SPAC22H12.01c |mug35|SPAC23G3.13c|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 234
Score = 29.9 bits (64), Expect = 0.53
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +2
Query: 389 LQDSPQDERIRAENGGDGDTVDKEVNLFPTKKSLEPFLD 505
L D Q + +R ++ GD + DKE ++ P S +P+ D
Sbjct: 114 LYDKTQKQLLRRDSSGDLTSTDKERDVSPVSHSEKPYWD 152
>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 697
Score = 29.9 bits (64), Expect = 0.53
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = +2
Query: 71 ID*HSLKFRSDKFVCTCLRHFQDKSSYIQVPNNKILQNN 187
+D FRS +C C D S IQ NN + NN
Sbjct: 581 VDDSHFSFRSQILICWCYYRLNDFKSLIQHTNNLLQSNN 619
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 28.7 bits (61), Expect = 1.2
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +2
Query: 491 EPFLDEMVPLLMGLVEDNSTLTRQHTLRAV 580
EP+L +++PLL+ DN+ R+ T+ AV
Sbjct: 1438 EPYLPDLLPLLLTSFGDNANEVREATMDAV 1467
>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1095
Score = 28.3 bits (60), Expect = 1.6
Identities = 14/63 (22%), Positives = 32/63 (50%)
Frame = +2
Query: 482 KSLEPFLDEMVPLLMGLVEDNSTLTRQHTLRAVCXLATLXRQRGCXTADILNKMYFVVLK 661
K LEP+LD+++ L+ L++ ++ + + +A ++ D + + F VL+
Sbjct: 488 KVLEPYLDDILQRLLTLLQSPKRYVQEQAVTTIATVADAAAKKFEKYFDAIMPLLFNVLQ 547
Query: 662 RLD 670
+ D
Sbjct: 548 QAD 550
>SPBC1921.07c ||SPBC21D10.13|SAGA complex subunit Sgf29
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 244
Score = 28.3 bits (60), Expect = 1.6
Identities = 20/66 (30%), Positives = 32/66 (48%)
Frame = +2
Query: 395 DSPQDERIRAENGGDGDTVDKEVNLFPTKKSLEPFLDEMVPLLMGLVEDNSTLTRQHTLR 574
D+P +ERI+A + G + +++ L T +SLE ++ + V NS LTR R
Sbjct: 43 DNPIEERIKACDAGIQTSEEQKKELEHTMQSLEMIINVLEKANEKPVITNSPLTRSRRNR 102
Query: 575 AVCXLA 592
A
Sbjct: 103 GTSFTA 108
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 27.9 bits (59), Expect = 2.1
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -3
Query: 421 PDALVLRAVLQRGAQTRDGRGAYRLSGATRRPY 323
PDA ++Q G++ R+G G Y L GA PY
Sbjct: 1500 PDAAAFSPLVQGGSEGREGFGDYGLLGAA-SPY 1531
>SPAC15E1.10 ||SPAP7G5.01|PI31 proteasome regulator
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 265
Score = 27.5 bits (58), Expect = 2.8
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Frame = +2
Query: 164 NNKILQNNITRSVKDHPT---VVKHLQNYNT--IFWNNGSFILCAAIS 292
N +LQ +T S+ + +V QN +T IFWN +ILCA S
Sbjct: 34 NGDVLQE-VTESLTEDSEFNYIVNESQNVSTRLIFWNKWIYILCANTS 80
>SPAC27F1.04c |nuf2||spindle pole body protein
Nuf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 441
Score = 25.8 bits (54), Expect = 8.6
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +2
Query: 473 PTKKSLEPFLDEMVPLLMGLVEDN 544
PT K++ P +E + L MGL N
Sbjct: 34 PTSKAVIPLYEEFLDLFMGLTRQN 57
>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 25.8 bits (54), Expect = 8.6
Identities = 10/33 (30%), Positives = 13/33 (39%)
Frame = -2
Query: 449 RCRHLHRSRPGCARPEGCPAARSTDTRRPRCVS 351
RC +S+ GC R C R C+S
Sbjct: 341 RCSRCKKSKKGCDRQRPCGRCRDAGLNSEDCIS 373
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 25.8 bits (54), Expect = 8.6
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = -2
Query: 416 CARPEGCPAARSTDTRRPRC 357
C E CP + S +T RP C
Sbjct: 55 CTAGENCPFSHSLETERPIC 74
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,352,807
Number of Sequences: 5004
Number of extensions: 67266
Number of successful extensions: 192
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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