Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_N20
         (902 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha...    87   4e-18
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo...    64   3e-11
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    28   1.6  
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ...    27   2.8  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   6.4  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    26   8.4  
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos...    26   8.4  

>SPCC364.06 |nap1||nucleosome assembly protein Nap1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 393

 Score = 86.6 bits (205), Expect = 4e-18
 Identities = 59/179 (32%), Positives = 84/179 (46%)
 Frame = +3

Query: 243 LHAEAMASLPPNVRRRIRALRTLQKEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIV 422
           L +E ++ LP  V+RRI  LR LQK + D+E++F  E+                 R+ +V
Sbjct: 63  LTSEGVSELPEAVQRRISGLRGLQKRYSDLESQFQKELFELEKAYAKKYAPIFKRRSEVV 122

Query: 423 NGTYEPNDDECLNPWRDDTEEEELARAVQNAAITEGEEKKDDKAIEPPRDPNVKGIPDFW 602
            G  EP ++E         ++ E A   +    T  E KK +         + KGIP+FW
Sbjct: 123 RGADEPTEEEI--------KKGEAADENEKKEPTSSESKKQEGG------DDTKGIPEFW 168

Query: 603 YNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPISFTLEFYFAPNEYFXIXYLLKS 779
               +NV  LSEM+   DE  L  L DI++   E P  F LEF FA N +F    L K+
Sbjct: 169 LTAMKNVLSLSEMITPEDEGALSHLVDIRISYMEKP-GFKLEFEFAENPFFTNKILTKT 226


>SPBC2D10.11c |||nucleosome assembly protein Nap2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 64.1 bits (149), Expect = 3e-11
 Identities = 63/203 (31%), Positives = 88/203 (43%), Gaps = 9/203 (4%)
 Frame = +3

Query: 198 SGVTRNE--MIAAITNRLHAEA------MASLPPNVRRRIRALRTLQKEFVDIEAKFYSE 353
           SG+ RN   M++ I  RL +        + SL P V+ RI AL+ LQK+   I+ +F  +
Sbjct: 56  SGLLRNNPAMLSMIEGRLSSLVGKSSGYIESLAPAVQNRITALKGLQKDCDAIQYEFRQK 115

Query: 354 VHAXXXXXXXXXXXXXXXRALIVNGTYEPNDDECLNPWRDDTEEEELARAVQNAAITEGE 533
           +                 RA I+ G  EP DDE       D EEE      QN       
Sbjct: 116 MLDLETKYEKKYQPIFSRRAEIIKGVSEPVDDEL------DHEEE----IFQNNL----- 160

Query: 534 EKKDDKAIEPPRDPNVKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIK-VQMHEDP 710
                        P+ KGIP+FW     NV ++ EM+   DE +L+ L DI+   +  D 
Sbjct: 161 -------------PDPKGIPEFWLTCLHNVFLVGEMITPEDENVLRSLSDIRFTNLSGDV 207

Query: 711 ISFTLEFYFAPNEYFXIXYLLKS 779
             + LEF F  N+YF    L K+
Sbjct: 208 HGYKLEFEFDSNDYFTNKILTKT 230


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +2

Query: 227 GHHKSPSCRSDGIPTPECSSANPRLENSSEGVCRH*GQVL 346
           GHHK+P CR+  +      S N R E   + V RH G V+
Sbjct: 485 GHHKNPKCRAKKLVV---ESRNGRREYVQDAVRRH-GDVI 520


>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 726

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 507 QNAAITEGEEKKDDKAIEPPRDPNVKGIP 593
           +N+ + E EEK D +AIE  ++ +V G P
Sbjct: 554 KNSLVNEAEEKNDLEAIEAAKNFHVNGKP 582


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1038

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +3

Query: 483 EEELARAVQNAAITEGEEKKDDKAIEPPRDPNVKGI 590
           EEEL+ ++ N    + E++KD+   +P   P++  +
Sbjct: 475 EEELSDSLSNDFGIDAEKEKDENLSKPEHHPSITSV 510


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 186  HLLKSGVTRNEMIAAITNRLHAEAMASLP 272
            HLL++  T +E  AA   +LH + + S P
Sbjct: 1596 HLLRNSATNDETKAAFVYQLHKQGILSEP 1624


>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
 Frame = -1

Query: 581 YIGIP-WRLDSLVILLFLTLSDGSI---LYRPS*LFFFSVITPWVETFIIIRFIC 429
           Y G+  + + ++ ILLF ++  G++   L++P  +   SV T W+ + I + F+C
Sbjct: 659 YTGLDSYNIFAVGILLFTSVFAGALWWCLHQPKRMMDRSVKTFWIMSSISLTFLC 713


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,371,517
Number of Sequences: 5004
Number of extensions: 65172
Number of successful extensions: 208
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)