Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP19_F_N17
(884 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 1.5
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 28 1.5
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 2.7
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 4.7
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 4.7
SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr... 26 6.2
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 26 6.2
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 6.2
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 28.3 bits (60), Expect = 1.5
Identities = 11/29 (37%), Positives = 12/29 (41%)
Frame = +1
Query: 790 PPXXPXPPPPXXKKKXTPPPXXXNXPXPP 876
PP P P TPPP + P PP
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPP 1718
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 28.3 bits (60), Expect = 1.5
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +3
Query: 801 PPPPPPXXKKKXXPPPXXXXXXXPP 875
PPPPPP K PP PP
Sbjct: 1882 PPPPPPMALPKAGPPSAAPTSALPP 1906
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.5 bits (58), Expect = 2.7
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +3
Query: 801 PPPPPPXXKKKXXPPP 848
PPPPPP + PPP
Sbjct: 11 PPPPPPGFEPPSQPPP 26
Score = 26.2 bits (55), Expect = 6.2
Identities = 12/30 (40%), Positives = 13/30 (43%)
Frame = +2
Query: 794 PXXPXPPPQXXKKXXPPPPXXXTXPPPXXI 883
P P PPP PPPP PPP +
Sbjct: 9 PPPPPPPPGFEPPSQPPPP-----PPPGYV 33
Score = 25.8 bits (54), Expect = 8.2
Identities = 12/31 (38%), Positives = 13/31 (41%)
Frame = +1
Query: 790 PPXXPXPPPPXXKKKXTPPPXXXNXPXPPXH 882
PP P PPPP PP P PP +
Sbjct: 5 PPGNPPPPPP---PPGFEPPSQPPPPPPPGY 32
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.6 bits (56), Expect = 4.7
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +3
Query: 801 PPPPPPXXKKKXXPP 845
PPPPPP + + PP
Sbjct: 312 PPPPPPSRRNRGKPP 326
Score = 26.2 bits (55), Expect = 6.2
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +3
Query: 801 PPPPPPXXKKKXXPPP 848
PPPPPP ++ PP
Sbjct: 311 PPPPPPPSRRNRGKPP 326
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 26.6 bits (56), Expect = 4.7
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +3
Query: 264 PPPXPXRXXPPPPKSGAGV 320
PPP P PPPP GV
Sbjct: 752 PPPAPIMGGPPPPPPPPGV 770
Score = 26.2 bits (55), Expect = 6.2
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +3
Query: 801 PPPPPPXXKKKXXPPP 848
PPPPPP PPP
Sbjct: 763 PPPPPPGVAGAGPPPP 778
Score = 25.8 bits (54), Expect = 8.2
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = +2
Query: 794 PXXPXPPPQXXKKXXPPPPXXXTXPPP 874
P P PPP PPPP PPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPP----PPPP 783
Score = 25.8 bits (54), Expect = 8.2
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +3
Query: 801 PPPPPPXXKKKXXPPP 848
PPPPPP PPP
Sbjct: 762 PPPPPPPGVAGAGPPP 777
>SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 172
Score = 26.2 bits (55), Expect = 6.2
Identities = 10/37 (27%), Positives = 14/37 (37%)
Frame = +1
Query: 739 PXKKXXPGXXXGXXXXXPPXXPXPPPPXXKKKXTPPP 849
P ++ P PP PPP + + PPP
Sbjct: 10 PPRRAAPARSASTAAALPPRTMAPPPAPSRVQQAPPP 46
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 26.2 bits (55), Expect = 6.2
Identities = 11/32 (34%), Positives = 13/32 (40%)
Frame = +2
Query: 383 PXPPFXXKXPPPXXKKNPXPPXXEKKXXPPRG 478
P P PPP + P +K PPRG
Sbjct: 412 PARPTESPPPPPISSSSTTPRPDDKPSLPPRG 443
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.2 bits (55), Expect = 6.2
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +3
Query: 258 AXPPPXPXRXXPPPPKSGAGVXRRP 332
A P P P PP PK AGV P
Sbjct: 1168 APPVPAPSSGIPPVPKPAAGVPPVP 1192
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.148 0.518
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,082,385
Number of Sequences: 5004
Number of extensions: 31438
Number of successful extensions: 166
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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