Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_N12
         (924 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.70 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   2.1  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   2.8  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    24   3.4  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   4.9  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.5 bits (63), Expect = 0.70
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = +1

Query: 745 PPPPPXXXXXXXXXXXXXXXXXSPPPPPPP 834
           PPPPP                 S PPPPPP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366



 Score = 28.3 bits (60), Expect = 1.6
 Identities = 13/31 (41%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
 Frame = +1

Query: 745 PPPPPXXXXXXXXXXXXXXXXXS-PPPPPPP 834
           PPPPP                 S PPPPPPP
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPPPP 343



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 11/29 (37%), Positives = 11/29 (37%)
 Frame = +2

Query: 743 PPPPPPXXXXXXXXXXXXXXXXXXPPPPP 829
           PPPPPP                  PPPPP
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 11/30 (36%), Positives = 11/30 (36%)
 Frame = +1

Query: 745 PPPPPXXXXXXXXXXXXXXXXXSPPPPPPP 834
           PPP P                  PPPPPPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +1

Query: 811 SPPPPPPPXXXXKKKK 858
           S PPPPPP    KK+K
Sbjct: 22  SQPPPPPPPGYVKKRK 37



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 14/39 (35%), Positives = 15/39 (38%)
 Frame = +2

Query: 743 PPPPPPXXXXXXXXXXXXXXXXXXPPPPPPXXXXXKKKK 859
           PPPPPP                  PPPPPP     +K K
Sbjct: 9   PPPPPPPPGFEPPSQP--------PPPPPPGYVKKRKNK 39


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 23.8 bits (49), Expect(2) = 3.4
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 814 PPPPPPP 834
           PPPPPPP
Sbjct: 946 PPPPPPP 952



 Score = 21.4 bits (43), Expect(2) = 3.4
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = +1

Query: 811 SPPPPPP 831
           +PPPPPP
Sbjct: 906 TPPPPPP 912


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +1

Query: 814  PPPPPPPXXXXKKK 855
            PPPPPPP    +KK
Sbjct: 1095 PPPPPPPPAEVEKK 1108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,697,495
Number of Sequences: 5004
Number of extensions: 25162
Number of successful extensions: 222
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)