Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_N09
         (907 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1224 + 31858110-31858338,31859180-31859301,31859398-318595...    29   3.8  
08_01_0052 + 361505-361969,362270-362348,362816-362880,363069-36...    29   5.1  
04_04_1405 - 33305948-33309676,33309749-33310468,33310533-333114...    29   5.1  

>04_04_1224 +
           31858110-31858338,31859180-31859301,31859398-31859507,
           31859661-31859725,31859940-31860004,31860387-31860632,
           31861212-31861313,31861484-31861534,31862015-31862105,
           31862777-31862841
          Length = 381

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -2

Query: 663 ARDNHLKTPQENRRAGTAAAMCGLAQSHKPAPVPALRNNTSVMSLCGKSLTIK 505
           AR    K P  +R+A TAAA      S   +P P+L     + ++C   L ++
Sbjct: 2   ARPKRTKPPPPSRKAETAAAAAQRPSSSSSSPSPSLPEALLLATVCMVGLPVE 54


>08_01_0052 +
           361505-361969,362270-362348,362816-362880,363069-363236,
           363731-364171
          Length = 405

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +1

Query: 70  IFGLEFQDFSCHVTYYLPMFCFDFIVSVVSELN*SINITRK 192
           +F L+ Q F  HV Y L  FC  F + +++    ++ + +K
Sbjct: 170 LFNLDLQFFFNHVVYRLQQFCSTFFLQLINLAVTALKVIKK 210


>04_04_1405 -
           33305948-33309676,33309749-33310468,33310533-33311439,
           33334405-33334484
          Length = 1811

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 5/72 (6%)
 Frame = +2

Query: 326 CRQHLLNLPAAVPKSIDFLNKSVNNIKLPPFTRDNVLYYY----IPMQGLASYTT-LSVS 490
           C   +L+LP   P  +     S+ N++ PP  R  +   Y     P + L  YTT +  +
Sbjct: 11  CTHLILSLPLRAPAMVKAFVASLRNVRWPPRFRPTITEEYDGSVNPTEFLQVYTTGIEAA 70

Query: 491 VMNPHLMVRLFP 526
             +  +M   FP
Sbjct: 71  GGDDRVMANFFP 82


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,465,068
Number of Sequences: 37544
Number of extensions: 367032
Number of successful extensions: 885
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 885
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)