Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_N09
         (907 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z54235-1|CAA90971.1|  416|Caenorhabditis elegans Hypothetical pr...    50   2e-06
Z14092-9|CAA78474.1| 1429|Caenorhabditis elegans Hypothetical pr...    31   0.86 
M12069-1|AAA70191.1| 1429|Caenorhabditis elegans protein ( C.ele...    31   0.86 
Z92777-8|CAJ58494.1|  293|Caenorhabditis elegans Hypothetical pr...    30   2.6  

>Z54235-1|CAA90971.1|  416|Caenorhabditis elegans Hypothetical
           protein C09G9.1 protein.
          Length = 416

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 23/80 (28%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
 Frame = +2

Query: 410 PPFTRDNVLYYYIPMQGLASYTTLSVSVMNPHLMVRLFPQRD--ITDVLFLSAGTGAGLW 583
           PP T  + L +Y+P  G  S+T  +V + +P+++  LFP  D  +++ +  +A  G G +
Sbjct: 29  PPVTSRSFLSHYLPASGALSHTLYTVHLFSPNIISSLFPTGDLAVSNTILFNANVGLGFY 88

Query: 584 LWARPHMAAAVPARRFSWGV 643
           ++ R H+    P  R  + V
Sbjct: 89  VYFRRHLHRVNPWERVEFSV 108


>Z14092-9|CAA78474.1| 1429|Caenorhabditis elegans Hypothetical
           protein R107.8 protein.
          Length = 1429

 Score = 31.5 bits (68), Expect = 0.86
 Identities = 21/75 (28%), Positives = 29/75 (38%), Gaps = 1/75 (1%)
 Frame = +1

Query: 418 HKGQCTLLLHTNARAC*LHNPIS*CD-EPSFNGQALPAKRHHGCIVS*CWNWGRFMALGK 594
           HK  C     +N   C  H     CD  P F G     ++   C+ S C N G  + + +
Sbjct: 543 HKDLCLENPCSNGGVCHQHRESFSCDCPPGFYGNGCEQEKMFRCLKSTCQNGG--VCINE 600

Query: 595 TTHGCSCSCTSIFLG 639
              G  C C+  F G
Sbjct: 601 EEKGRKCECSYGFSG 615


>M12069-1|AAA70191.1| 1429|Caenorhabditis elegans protein (
           C.elegans homeotic lin-12 protein gene, complete cds. ).
          Length = 1429

 Score = 31.5 bits (68), Expect = 0.86
 Identities = 21/75 (28%), Positives = 29/75 (38%), Gaps = 1/75 (1%)
 Frame = +1

Query: 418 HKGQCTLLLHTNARAC*LHNPIS*CD-EPSFNGQALPAKRHHGCIVS*CWNWGRFMALGK 594
           HK  C     +N   C  H     CD  P F G     ++   C+ S C N G  + + +
Sbjct: 543 HKDLCLENPCSNGGVCHQHRESFSCDCPPGFYGNGCEQEKMFRCLKSTCQNGG--VCINE 600

Query: 595 TTHGCSCSCTSIFLG 639
              G  C C+  F G
Sbjct: 601 EEKGRKCECSYGFSG 615


>Z92777-8|CAJ58494.1|  293|Caenorhabditis elegans Hypothetical
           protein C17H1.13 protein.
          Length = 293

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 12/34 (35%), Positives = 24/34 (70%)
 Frame = +2

Query: 299 DILEKVYRNCRQHLLNLPAAVPKSIDFLNKSVNN 400
           DILE+ Y +  QH+ ++ A + K++  ++KS++N
Sbjct: 124 DILEEKYNSTVQHVKHIWALISKAVTVVHKSLSN 157


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,290,305
Number of Sequences: 27780
Number of extensions: 332160
Number of successful extensions: 800
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)