Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_N08
         (901 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    28   2.1  
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi...    27   2.7  
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch...    27   3.6  
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    26   6.3  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    26   6.3  
SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4 |Schiz...    26   6.3  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    26   8.4  

>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 190 DYFSLGPGHHC*NDLKICFLKCITK 264
           + FS  PG  C N   +C  KC+TK
Sbjct: 432 ELFSYSPGLQCENCSFVCHKKCVTK 456


>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -3

Query: 737 FVFSDDSLLAAASFKEDNKS 678
           F  +DD+LL   SFKED KS
Sbjct: 260 FELNDDTLLEKISFKEDQKS 279


>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1031

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -2

Query: 372 LIKLFSNCHFQKLYSQLMLYLS*VLH 295
           L+ LF N H Q ++S  M  LS VLH
Sbjct: 725 LVFLFKNYHLQNIFSSEMRGLSRVLH 750


>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 19/67 (28%), Positives = 29/67 (43%)
 Frame = +3

Query: 300 ELKKDITLIVNKVFESDSLRITLSDDDDPMFLCVLILTRIDYDDLKKQQGLLVDFDNFPA 479
           ++KK I  +   V   +S+ I    D D  F+C L+  +     LK   GL      +P 
Sbjct: 348 DIKKSIRSLNKAVSPENSIDIEDETDRDDEFICFLLSYQQLQKALKSNLGLFQLSCLYPL 407

Query: 480 QLVKLLQ 500
            L  L+Q
Sbjct: 408 SLNHLIQ 414


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 376  SSDKVILKLSLSKTLFTINVISFLSSSHPR 287
            SSD  +++LSL      +NVI F S   PR
Sbjct: 990  SSDPALIQLSLDGFRLAMNVIFFFSMDLPR 1019


>SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 674

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 22/82 (26%), Positives = 37/82 (45%)
 Frame = +3

Query: 399 VLILTRIDYDDLKKQQGLLVDFDNFPAQLVKLLQQCAINNMFLIMQQTNPLQYYLEVVEH 578
           VL   R+ Y+ L K      D+D +   L+KL +     N      +   +    EVVE 
Sbjct: 300 VLDKRRLQYEKLLKDSPY--DYDTW-LDLLKLEESAGDINTIRETYE-KAIAKVPEVVEK 355

Query: 579 NEFKRLIHLSLKTCPATDTDIK 644
           N ++R +++ L  C   + D+K
Sbjct: 356 NAWRRYVYIWLNYCLFEEIDVK 377


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = +3

Query: 231 SQDLLFKMYHKG-KYYVTFKRGCEELKKDITLIVNKVFESDSLRITLSDD 377
           + +L++K++ +   + ++ K   EE   D  L + +VFE+D+L    SD+
Sbjct: 287 ASELMYKLFSEHIAFLLSLKNLPEEATLDCMLSICQVFENDNLHRGHSDE 336


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,039,010
Number of Sequences: 5004
Number of extensions: 58120
Number of successful extensions: 140
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)