Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_N08
         (901 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0401 - 23819230-23819829,23822612-23823194,23823303-23824027     30   2.2  
04_03_0619 - 18079520-18079693,18081071-18081156,18081731-18082730     29   3.8  
03_05_0668 - 26584865-26585058,26587411-26587846,26587962-265880...    29   6.7  

>03_05_0401 - 23819230-23819829,23822612-23823194,23823303-23824027
          Length = 635

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 13/25 (52%), Positives = 19/25 (76%)
 Frame = +3

Query: 279 TFKRGCEELKKDITLIVNKVFESDS 353
           ++K  CE++KKD+ + VNK FE DS
Sbjct: 363 SYKNDCEDIKKDVVVRVNK-FEWDS 386


>04_03_0619 - 18079520-18079693,18081071-18081156,18081731-18082730
          Length = 419

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 33/130 (25%), Positives = 59/130 (45%), Gaps = 5/130 (3%)
 Frame = +3

Query: 279 TFKRGCEELKKDITLIVNKV--FESDSLRITLSDDDDPMFLCVLILTRIDYDDLKKQQGL 452
           T  RGC  L  D  + + K   F+ DS     +D+       +LIL+R++++++ K  G 
Sbjct: 63  TVYRGCINLHPDNPVAIKKCKGFDEDSWA-EFTDE-------LLILSRVNHENIVKLLGC 114

Query: 453 LVDFDNFPAQLVKLLQQCAINNMFLIMQQTN--PLQYYLEV-VEHNEFKRLIHLSLKTCP 623
            + FD  P  + + +Q   + N+  I    +   L+  L+V  E  E    +H S+    
Sbjct: 115 CLQFD-VPILVYEFVQNKTLYNLIHIQNDPSIRTLEIRLKVAAESAEALAYLHSSVDHPI 173

Query: 624 ATDTDIKPTH 653
               D+K T+
Sbjct: 174 ILHGDVKSTN 183


>03_05_0668 -
           26584865-26585058,26587411-26587846,26587962-26588016,
           26588299-26588642
          Length = 342

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +3

Query: 243 LFKMYHKGKYYVTFKRGCEELKKDITLIVNKVFESDSLRITLSDDDDP 386
           + + YH     V +K  CE++KK + + VN  FE DS    + D  +P
Sbjct: 188 IVRKYHYEYESVWYKNHCEDIKKYVVVRVNN-FEWDSDNDDILDTANP 234


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,997,378
Number of Sequences: 37544
Number of extensions: 288217
Number of successful extensions: 539
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)