Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_N08
         (901 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021492-4|CAA16384.1|  492|Caenorhabditis elegans Hypothetical ...    33   0.37 
U49956-1|AAO38615.1|  669|Caenorhabditis elegans Hypothetical pr...    30   2.6  
AF125963-3|AAD14744.2|  356|Caenorhabditis elegans Serpentine re...    29   3.4  
Z81072-5|CAB03020.1|  591|Caenorhabditis elegans Hypothetical pr...    29   6.0  

>AL021492-4|CAA16384.1|  492|Caenorhabditis elegans Hypothetical
           protein Y45F10D.9 protein.
          Length = 492

 Score = 32.7 bits (71), Expect = 0.37
 Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
 Frame = +3

Query: 282 FKRGCEELKKDITLIVNKVFESDSLRITLSDDDDPMFLCVLILTRIDYDDLKKQQGLLVD 461
           FK    ++K  I+   N+      L+  +S  DD  FL    L    Y  L +   L VD
Sbjct: 27  FKAYKTKVKLKISEQRNETSGEKELKFEISRSDDFEFLFSETLNNEKYQILARDHDLTVD 86

Query: 462 FDNFPAQLVK-LLQQCAINNM 521
           FD FP  +++ LL +  + N+
Sbjct: 87  FDAFPKVIIQHLLCKNIVKNL 107


>U49956-1|AAO38615.1|  669|Caenorhabditis elegans Hypothetical
           protein M03A1.3 protein.
          Length = 669

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
 Frame = -3

Query: 809 SHLIIXILANVRF-NSLILFSKLTHFVFSDDSLLAAASFKEDNKSFKFLIVLAMCWFNIC 633
           +H I+ I   + F  S  LF++L   +F + +L  +A + + +++  F+ V+ MC   +C
Sbjct: 135 AHAILMIFGWLLFVPSGFLFARLGKDLFKEQTLFGSAVWFQIHRAANFMGVVCMCTSMLC 194

Query: 632 I 630
           I
Sbjct: 195 I 195


>AF125963-3|AAD14744.2|  356|Caenorhabditis elegans Serpentine
           receptor, class h protein10 protein.
          Length = 356

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +3

Query: 561 LEVVEHNEFKRLIHLSLKTCPATDTDIKPTH 653
           LE++  NEF  L   S  T P + TDIKP H
Sbjct: 179 LEII--NEFPELTCTSAVTLPKSSTDIKPIH 207


>Z81072-5|CAB03020.1|  591|Caenorhabditis elegans Hypothetical
           protein F30A10.6 protein.
          Length = 591

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 552 QYYLEVVEHNEFKRLIHLSLKTCPATDTDIKPTHG 656
           ++YLE+  H    ++I    +  P  DTDIK  +G
Sbjct: 30  KHYLEIDRHTNVMKIIDSRKQRVPIADTDIKFIYG 64


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,443,079
Number of Sequences: 27780
Number of extensions: 309821
Number of successful extensions: 656
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)