Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP19_F_N07
(906 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 139 6e-34
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 66 5e-12
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 60 6e-10
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 59 1e-09
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 52 1e-07
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 52 1e-07
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 51 2e-07
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 47 3e-06
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 47 4e-06
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 47 4e-06
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 45 1e-05
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 45 1e-05
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 45 2e-05
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 45 2e-05
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 45 2e-05
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 44 3e-05
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 42 9e-05
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 42 1e-04
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 42 2e-04
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 41 3e-04
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 41 3e-04
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 40 5e-04
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 40 5e-04
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 40 6e-04
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 39 8e-04
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 39 8e-04
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 39 0.001
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 37 0.005
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 36 0.006
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 36 0.010
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 35 0.014
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 34 0.024
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 34 0.024
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 33 0.056
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 33 0.074
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 33 0.074
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 32 0.097
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 32 0.13
SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomy... 30 0.39
SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein Cwf23|Schiz... 30 0.39
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 29 1.2
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 29 1.2
SPAC2G11.03c |vps45||vacuolar sorting protein Vps 45|Schizosacch... 29 1.2
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ... 28 2.1
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo... 27 2.8
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 26 6.4
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 26 6.4
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po... 26 8.5
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 139 bits (336), Expect = 6e-34
Identities = 65/153 (42%), Positives = 100/153 (65%), Gaps = 6/153 (3%)
Frame = +3
Query: 225 SQAHNSAE-APGRXDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGF 401
S N+ E +P +D K+F+GGL+WETTD LRD+F +GE+ V D TGRSRGF
Sbjct: 147 SNEDNAEETSPFNREDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGF 206
Query: 402 AFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH-----GKIFVGGLSSEISDDEIRN 566
F+ FK P+ +++VM+ EH ++ K +DPK+A R K+FVGG+ + +++E RN
Sbjct: 207 GFLTFKNPKCVNEVMSK-EHHLDGKIIDPKRAIPREEQEKTAKMFVGGVPGDCTEEEFRN 265
Query: 567 FFSEFGTILEVEMPFDKTKNQRKGFCFITFESE 665
FF++FG +L+ + DK + +GF F+T+E+E
Sbjct: 266 FFNQFGRVLDATLMMDKDTGRPRGFGFVTYENE 298
Score = 59.7 bits (138), Expect = 6e-10
Identities = 25/75 (33%), Positives = 45/75 (60%)
Frame = +3
Query: 273 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 452
K+FVGG+ + T++E R+ F +G + + D +TGR RGF F+ ++ +++ M+
Sbjct: 248 KMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQ 307
Query: 453 GEHTINNKKVDPKKA 497
TI+ K V+ K+A
Sbjct: 308 PYITIHGKPVEVKRA 322
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 66.5 bits (155), Expect = 5e-12
Identities = 46/150 (30%), Positives = 71/150 (47%), Gaps = 23/150 (15%)
Frame = +3
Query: 276 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA- 452
+FVG LSW D+ L F YG I V D +GRS+G+ ++ F+ PE+ +AA
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAAN 324
Query: 453 GEHTINNKKV-----DPKK------AKARHGK-----------IFVGGLSSEISDDEIRN 566
G I+ + V +P+ A+ R G +FVG LS ++D++
Sbjct: 325 GTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEPSDTVFVGNLSFNATEDDLST 384
Query: 567 FFSEFGTILEVEMPFDKTKNQRKGFCFITF 656
F G I + +P D + KGF ++TF
Sbjct: 385 AFGGCGDIQSIRLPTDPQSGRLKGFGYVTF 414
Score = 56.4 bits (130), Expect = 5e-09
Identities = 25/64 (39%), Positives = 38/64 (59%)
Frame = +3
Query: 276 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 455
+FVG LS+ T+ +L FG G+I+SI + TDP +GR +GF ++ F +S K +
Sbjct: 368 VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEMN 427
Query: 456 EHTI 467
H I
Sbjct: 428 GHFI 431
Score = 37.5 bits (83), Expect = 0.003
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +3
Query: 516 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 668
+FVG LS + D + F E+GTI+ + D + KG+ ++ FE+ +
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPE 315
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 59.7 bits (138), Expect = 6e-10
Identities = 41/137 (29%), Positives = 65/137 (47%), Gaps = 8/137 (5%)
Frame = +3
Query: 276 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 455
L+VG L T+ L + F + G + SI V D T RS G+A++ F E +K +
Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDEL 141
Query: 456 EHTINN--------KKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPF 611
+T+ + DP K G +F+ L I + + + FS FG IL ++
Sbjct: 142 NYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAV 201
Query: 612 DKTKNQRKGFCFITFES 662
D+ N KG+ F+ F+S
Sbjct: 202 DELGN-AKGYGFVHFDS 217
Score = 46.4 bits (105), Expect = 6e-06
Identities = 21/57 (36%), Positives = 32/57 (56%)
Frame = +3
Query: 276 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 446
LF+ L E D+ L+ F A+G I S + TD G+S+GF F+ + PE +K +
Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTD-EQGKSKGFGFVCYTTPEEANKAV 421
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 58.8 bits (136), Expect = 1e-09
Identities = 25/63 (39%), Positives = 40/63 (63%)
Frame = +3
Query: 276 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 455
LFVG L +ETTD +L++HFG G+I + + T +TG+ +GF F+ F ++ K M G
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDIDTCMKAMELG 289
Query: 456 EHT 464
++
Sbjct: 290 HNS 292
Score = 33.1 bits (72), Expect = 0.056
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +3
Query: 516 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 656
+FVG L E +D +++ F + G I V + + + KGF F+ F
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDF 276
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 52.0 bits (119), Expect = 1e-07
Identities = 32/97 (32%), Positives = 54/97 (55%), Gaps = 5/97 (5%)
Frame = +3
Query: 240 SAEAPGRXDDRK--LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIV 413
S G+ +DRK LFVG L +++ + L+ HF G++ S+ + TD +GR +G+AF+
Sbjct: 80 SKRQKGKNNDRKVILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVE 139
Query: 414 FKAPES--IDKVMAAGEHTI-NNKKVDPKKAKARHGK 515
F P++ I K + HTI +K++ + GK
Sbjct: 140 FINPKTDVISKALKF-HHTIYKERKINIELTAGGGGK 175
Score = 42.7 bits (96), Expect = 7e-05
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Frame = +3
Query: 456 EHTINNKKVDPKKAKARHGK-------IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFD 614
+H+++N K+K + GK +FVG L + S + ++ F G + V +P D
Sbjct: 67 KHSVSNPPHKTLKSKRQKGKNNDRKVILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTD 126
Query: 615 KTKNQRKGFCFITF 656
KT ++KG+ F+ F
Sbjct: 127 KTSGRQKGYAFVEF 140
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 51.6 bits (118), Expect = 1e-07
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Frame = +3
Query: 264 DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 443
D + ++VG + + T +EL+ HF + G + + + D TG +GFA+I F P +
Sbjct: 53 DAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNA 112
Query: 444 MAAGEHTINNK--KVDPKK 494
+ ++ + KV PK+
Sbjct: 113 LLLNGSMLHERPLKVTPKR 131
Score = 33.9 bits (74), Expect = 0.032
Identities = 13/47 (27%), Positives = 27/47 (57%)
Frame = +3
Query: 516 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 656
++VG + ++ +E+++ F+ G++ V + DK KGF +I F
Sbjct: 57 VYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEF 103
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 51.2 bits (117), Expect = 2e-07
Identities = 23/63 (36%), Positives = 36/63 (57%)
Frame = +3
Query: 270 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 449
R +FVG L++E ++ L +FG G I+ + + DP T +GFA+I FK +DK +
Sbjct: 270 RCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALL 329
Query: 450 AGE 458
E
Sbjct: 330 LNE 332
Score = 35.1 bits (77), Expect = 0.014
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +3
Query: 516 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFE 659
+FVG L+ E ++ + +F + G+I V + D N KGF +I F+
Sbjct: 272 VFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFK 319
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 47.2 bits (107), Expect = 3e-06
Identities = 23/72 (31%), Positives = 38/72 (52%)
Frame = +3
Query: 456 EHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRK 635
E TI K + K + + G ++VG L + ++R +FS+FG +L + M ++ K
Sbjct: 87 EKTIKKKVSENKNLQKKKGVLYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSK 146
Query: 636 GFCFITFESEQV 671
+ FI FES V
Sbjct: 147 HYAFIEFESLDV 158
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 46.8 bits (106), Expect = 4e-06
Identities = 38/153 (24%), Positives = 69/153 (45%), Gaps = 20/153 (13%)
Frame = +3
Query: 264 DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 443
D R +FV L+ T +EL D F G + + D +GRS+G A++ F +S+
Sbjct: 238 DRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAA 297
Query: 444 MA-AGEHTINNKKV-----DPKKAKARHG--------------KIFVGGLSSEISDDEIR 563
+A +G+ + + K KAR ++ V + ++D++++
Sbjct: 298 IALSGKRLLGLPVIVQLTEAEKNRKAREAAELARAASAEIPFHRLCVSNIHFNLTDEDVK 357
Query: 564 NFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 662
F FG I V + D +N+ KGF +I + +
Sbjct: 358 AIFEPFGDIEFVHLQRD-DQNRSKGFGYIQYRN 389
Score = 36.7 bits (81), Expect = 0.005
Identities = 16/53 (30%), Positives = 34/53 (64%)
Frame = +3
Query: 273 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 431
+L V + + TD++++ F +G+IE ++++ D + RS+GF +I ++ P S
Sbjct: 341 RLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRD-DQNRSKGFGYIQYRNPIS 392
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 46.8 bits (106), Expect = 4e-06
Identities = 22/53 (41%), Positives = 33/53 (62%)
Frame = +3
Query: 258 RXDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 416
R D L V LS +T ++ELRD F +G I+ + + D TGR++GFAF+ +
Sbjct: 198 RDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSY 250
Score = 37.9 bits (84), Expect = 0.002
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = +3
Query: 489 KKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 656
K+ + + V LS + ++E+R+ F FG I V + DK + KGF F+++
Sbjct: 195 KRERDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSY 250
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 45.2 bits (102), Expect = 1e-05
Identities = 17/48 (35%), Positives = 30/48 (62%)
Frame = +3
Query: 513 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 656
++F+ L+ ++D++++ F FG + +V MP DK N KGF +I F
Sbjct: 324 RLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDF 371
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 45.2 bits (102), Expect = 1e-05
Identities = 19/50 (38%), Positives = 32/50 (64%)
Frame = +3
Query: 270 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 419
+ +F+ LS++T + ++ F YG IE I V + TG+S G+AF+VF+
Sbjct: 100 KTMFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFE 149
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 44.8 bits (101), Expect = 2e-05
Identities = 17/51 (33%), Positives = 33/51 (64%)
Frame = +3
Query: 516 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 668
I++G L ++++D+I FSEFG +++ + DK + KGF F+ +E ++
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQR 83
Score = 41.5 bits (93), Expect = 2e-04
Identities = 17/56 (30%), Positives = 32/56 (57%)
Frame = +3
Query: 264 DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 431
D +++G L ++ + ++ F +GE IN+ D TG+S+GFAF+ ++ S
Sbjct: 29 DSAYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRS 84
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 44.8 bits (101), Expect = 2e-05
Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Frame = +3
Query: 435 DKVMAAGEHTINNKKVD---PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEM 605
D+V E T +KK P+ ++ +FV G++S + +DE++ FS+FGT+ V +
Sbjct: 73 DEVDPNNESTALDKKEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRI 132
Query: 606 PFDKTKNQRKGFCFITFES 662
+ +GF F++F +
Sbjct: 133 MREPVTKASRGFGFLSFST 151
Score = 39.5 bits (88), Expect = 6e-04
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +3
Query: 276 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 428
LFV G++ + EL+ F +G + + + +P T SRGF F+ F E
Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVE 153
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 44.8 bits (101), Expect = 2e-05
Identities = 24/75 (32%), Positives = 40/75 (53%)
Frame = +3
Query: 282 VGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEH 461
VG LS++ T+ +L D FG + SI + DP T RSRGF ++ F+ +++ +A
Sbjct: 98 VGNLSFDLTENDLGDFFGE--GVTSIRLVIDPLTERSRGFGYVEFETADTLSAALALSGE 155
Query: 462 TINNKKVDPKKAKAR 506
+ + V A+ R
Sbjct: 156 DLMGRPVRITVAEPR 170
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 44.0 bits (99), Expect = 3e-05
Identities = 26/69 (37%), Positives = 38/69 (55%)
Frame = +3
Query: 276 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 455
LFV L+++T +L + F G I+ V T+P TG +RG+ F+ F E D AA
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLE--DAQRAAK 64
Query: 456 EHTINNKKV 482
E + NKK+
Sbjct: 65 E--LKNKKL 71
Score = 39.5 bits (88), Expect = 6e-04
Identities = 19/48 (39%), Positives = 28/48 (58%)
Frame = +3
Query: 276 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 419
+FV L +E T++EL +HF +G + + DP T RS G FI F+
Sbjct: 279 VFVRNLLFECTEQELYNHFRQFGPLAYAKLVKDPATDRSLGRGFIKFR 326
Score = 34.7 bits (76), Expect = 0.018
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +3
Query: 516 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 656
+FV L+ + D++ NFFS+ G I + + + +G+ F+TF
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTF 53
Score = 31.1 bits (67), Expect = 0.23
Identities = 18/82 (21%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Frame = +3
Query: 429 SIDKVMAAGEHTINNKKVDP--KKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVE 602
++D V +G+ + + ++ + + +FV L E ++ E+ N F +FG + +
Sbjct: 248 NVDDVEDSGDSSSDKNSINHEIRDNEGLEDTVFVRNLLFECTEQELYNHFRQFGPLAYAK 307
Query: 603 MPFDKTKNQRKGFCFITFESEQ 668
+ D ++ G FI F E+
Sbjct: 308 LVKDPATDRSLGRGFIKFRYEK 329
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 42.3 bits (95), Expect = 9e-05
Identities = 18/75 (24%), Positives = 40/75 (53%)
Frame = +3
Query: 276 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 455
+FVG + ++ +++++ + F G +++ + DP TG +G+ F F E+ A
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSET----TAMA 64
Query: 456 EHTINNKKVDPKKAK 500
+NN ++ P+K +
Sbjct: 65 VRKLNNSELGPRKIR 79
Score = 31.5 bits (68), Expect = 0.17
Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +3
Query: 516 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFIT-FESEQVYM 677
+FVG + ++S+ ++ F++ G + ++ D KG+ F F+SE M
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAM 63
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 41.9 bits (94), Expect = 1e-04
Identities = 20/54 (37%), Positives = 32/54 (59%)
Frame = +3
Query: 273 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI 434
++FV +S T ++LR HF ++GE+ +++K +P TG S G I F SI
Sbjct: 95 QVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCISFDKRSSI 148
Score = 33.5 bits (73), Expect = 0.042
Identities = 11/49 (22%), Positives = 27/49 (55%)
Frame = +3
Query: 513 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFE 659
++FV +S ++ +++R F FG + ++++ + G C I+F+
Sbjct: 95 QVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCISFD 143
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 41.5 bits (93), Expect = 2e-04
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Frame = +3
Query: 276 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK----APESIDKV 443
++VG L W T+D+ L D F G + + +P TGRS+GF + F+ A SI+K+
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEP-TGRSKGFGVVQFENENDAASSIEKL 340
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 40.7 bits (91), Expect = 3e-04
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Frame = +3
Query: 276 LFVGGLSWETTDKELRDHFGAYGE-IESINVKTDPNTGRSRGFAFIVFKAPESID-KVMA 449
LFVG L ++ L D F A G+ +++ V D N GRS+G+ F+ + + E+ D + A
Sbjct: 101 LFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDEN-GRSKGYGFVSYDSFETADAAIEA 159
Query: 450 AGEHTINNKKVDPKKAKARHGK 515
+ NK + A R GK
Sbjct: 160 MNNQFLMNKPITVSYAFKREGK 181
Score = 37.5 bits (83), Expect = 0.003
Identities = 28/143 (19%), Positives = 58/143 (40%), Gaps = 8/143 (5%)
Frame = +3
Query: 258 RXDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 437
R D +++G L + TD L + G + +I++ D GF F F + ++
Sbjct: 7 RNQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVE 66
Query: 438 KV-MAAGEHTINNKKVDPKKAKARHG-------KIFVGGLSSEISDDEIRNFFSEFGTIL 593
+ + K + +A G +FVG L + + + + FS G ++
Sbjct: 67 YACQILNQVKLFGKPIRVNRASQDRGVNTLIGANLFVGNLDPLVDERVLYDTFSALGQLV 126
Query: 594 EVEMPFDKTKNQRKGFCFITFES 662
+ + KG+ F++++S
Sbjct: 127 KAPQVARDENGRSKGYGFVSYDS 149
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 40.7 bits (91), Expect = 3e-04
Identities = 22/85 (25%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Frame = +3
Query: 426 ESIDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEM 605
+ ++ + A H + P + +A ++FVG LS+ EIR+ F GT+ +V +
Sbjct: 17 DQVEASVDAAVHASAEQSNTPAQ-QADDFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTI 75
Query: 606 PFDKTKNQRK----GFCFITFESEQ 668
PF + + + G F+TF +++
Sbjct: 76 PFRRVRRGTRLVPSGIAFVTFNNQE 100
Score = 39.5 bits (88), Expect = 6e-04
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Frame = +3
Query: 225 SQAHNSAEAPGRXDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSR--- 395
+ A S + DD ++FVG LS T E+R F G + + + +R
Sbjct: 29 ASAEQSNTPAQQADDFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVP 88
Query: 396 -GFAFIVFKAPESIDKVMAAGEHTINNKKVDPKK 494
G AF+ F E +DK + T+N K +D ++
Sbjct: 89 SGIAFVTFNNQEDVDKAI----ETLNGKTLDDRE 118
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 39.9 bits (89), Expect = 5e-04
Identities = 17/81 (20%), Positives = 43/81 (53%)
Frame = +3
Query: 264 DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 443
+ R+L+V + ++ +K++ F YG++ES+ + N + +GF ++V + +
Sbjct: 755 EGRELYVTNIDFKVNEKDVETFFRDYGQVESVRIPKRFN--QHKGFGYVVMTTNQDAENA 812
Query: 444 MAAGEHTINNKKVDPKKAKAR 506
++A + N+ ++ +K R
Sbjct: 813 LSAAGKQLGNRVLNVVLSKPR 833
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 39.9 bits (89), Expect = 5e-04
Identities = 14/57 (24%), Positives = 38/57 (66%)
Frame = +3
Query: 507 HGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVYM 677
H ++FVG L ++++D+ + FSE+ ++++ ++ D+ + + +GF F++F+ ++
Sbjct: 29 HFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDR-EGKTRGFGFVSFKDSDQFL 84
Score = 35.9 bits (79), Expect = 0.008
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +3
Query: 273 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 419
+LFVG L + D+ L F Y + V D G++RGF F+ FK
Sbjct: 31 RLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRD-REGKTRGFGFVSFK 78
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 39.5 bits (88), Expect = 6e-04
Identities = 16/41 (39%), Positives = 27/41 (65%)
Frame = +3
Query: 486 PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMP 608
P+ A + +FVGGLS +S++E++ F FG I+ V++P
Sbjct: 295 PQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIP 335
Score = 35.1 bits (77), Expect = 0.014
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +3
Query: 258 RXDDRKLFVGGLSWETTDKELRDHFGA-YGEIESINVKTDPNTGRSRGFAFIVF 416
+ + +FVG LS + ++ F + Y +S + TDP T SRG+ F+ F
Sbjct: 182 KASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRF 235
Score = 28.7 bits (61), Expect = 1.2
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +3
Query: 276 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTG 386
+FVGGLS +++EL+ F +GEI + VK P G
Sbjct: 305 VFVGGLSKFVSEEELKYLFQNFGEI--VYVKIPPGKG 339
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 39.1 bits (87), Expect = 8e-04
Identities = 23/55 (41%), Positives = 31/55 (56%)
Frame = +3
Query: 276 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 440
LFV L+ T D++L F +G+I S V D TG S +AFI F ES++K
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEK 300
Score = 31.5 bits (68), Expect = 0.17
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = +3
Query: 516 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 668
+FV L+ D+++ FS FG I+ ++ DK + FI F++++
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKE 296
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 39.1 bits (87), Expect = 8e-04
Identities = 15/34 (44%), Positives = 25/34 (73%)
Frame = +3
Query: 516 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDK 617
+FVGGL+S +S+ +++ F FG IL +++PF K
Sbjct: 299 VFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGK 332
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 38.7 bits (86), Expect = 0.001
Identities = 19/48 (39%), Positives = 31/48 (64%)
Frame = +3
Query: 276 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 419
LF+ LS++ T +E+ D FG YG + I + NT ++RG AF+V++
Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYGPVRQIRL---GNTVQTRGTAFVVYE 58
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 36.7 bits (81), Expect = 0.005
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Frame = +3
Query: 429 SIDKVMAAGEHTINNKKVDPKKAKA--RHGKIFVGGLSSEISDDEIRNFFSEFGTILEVE 602
SI ++ A + I K D + A + ++VG LS ++++I FS+ G I +
Sbjct: 3 SITRLDAVSPYLIRRFKNDLRALDAVKQSNCVYVGNLSFYTTEEQIYALFSKCGEIRRII 62
Query: 603 MPFDKTKNQRKGFCFITFESEQ 668
M D+ GFCF+ + Q
Sbjct: 63 MGVDRFTKTPCGFCFVEYFENQ 84
Score = 34.3 bits (75), Expect = 0.024
Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 2/101 (1%)
Frame = +3
Query: 276 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFI-VFKAPESIDKVMAA 452
++VG LS+ TT++++ F GEI I + D T GF F+ F+ +++D +
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALDSLKYI 93
Query: 453 GEHTINNKKVDPKKAKA-RHGKIFVGGLSSEISDDEIRNFF 572
+++ + + G+ + G S DE+R F
Sbjct: 94 SRTSLDERIIRADLDHGYEEGRQYGRGASGGQVRDEMREEF 134
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 36.3 bits (80), Expect = 0.006
Identities = 13/50 (26%), Positives = 29/50 (58%)
Frame = +3
Query: 276 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP 425
++VG + +E ++++ D F G ++S + DP +G+ +G+ F + P
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDP 56
Score = 31.1 bits (67), Expect = 0.23
Identities = 10/47 (21%), Positives = 26/47 (55%)
Frame = +3
Query: 516 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 656
++VG + E++++++ + F + G + ++ D Q KG+ F +
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEY 53
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 35.5 bits (78), Expect = 0.010
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 15/110 (13%)
Frame = +3
Query: 234 HNSAEAPGRXDDRK--LFVGGLSWETTDKELRDHFGAYGEIESI----------NVKTDP 377
++ PG+ +D ++VG + +D+E+ HF YG++ESI K P
Sbjct: 3 NSKLSVPGQYEDESSTIYVGNIDSRLSDEEIIKHFSKYGQVESIFRRLLDSFYPKEKAKP 62
Query: 378 NTGRSRG--FAFIVFKAPESIDKVMA-AGEHTINNKKVDPKKAKARHGKI 518
G + F+ F ESI++V+ A T+ +K+ K K+
Sbjct: 63 FKPPKNGVQYGFVKFVNAESIEEVLKDAKGMTLGQRKLTIKARVVNPAKL 112
Score = 34.3 bits (75), Expect = 0.024
Identities = 19/64 (29%), Positives = 31/64 (48%)
Frame = +3
Query: 303 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 482
T +L D F +G I S + PN+G S+G+ F+ F+ E+ + T+N V
Sbjct: 395 TCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEA----AVRAKDTLNGMMV 450
Query: 483 DPKK 494
K+
Sbjct: 451 GKKR 454
Score = 33.5 bits (73), Expect = 0.042
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +3
Query: 465 INNKKVD-PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTI 590
+NN K+ P + + I+VG + S +SD+EI FS++G +
Sbjct: 1 MNNSKLSVPGQYEDESSTIYVGNIDSRLSDEEIIKHFSKYGQV 43
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 35.1 bits (77), Expect = 0.014
Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +3
Query: 513 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTK-NQRKGFCFITFESEQ 668
+I+VGGLSS I ++ + FS FG++ +E+ T + F ++ F +++
Sbjct: 6 RIYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTPVGTIQRFAYLNFRTDE 58
Score = 33.5 bits (73), Expect = 0.042
Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = +3
Query: 267 DRKLFVGGLSWETTDKELRDHFGAYGEIESINV--KTDPNTGRSRGFAFIVFKAPE 428
+++++VGGLS +L F +G + ++ + K+ P G + FA++ F+ E
Sbjct: 4 EKRIYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTP-VGTIQRFAYLNFRTDE 58
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 34.3 bits (75), Expect = 0.024
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = +3
Query: 513 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 662
KI++ L + +D++ FG +L ++ + KGFCF F++
Sbjct: 311 KIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKN 360
Score = 30.3 bits (65), Expect = 0.39
Identities = 16/70 (22%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Frame = +3
Query: 273 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 452
K+++ L + ++ + +G++ S + + G S+GF F FK P + ++
Sbjct: 311 KIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVAISG 370
Query: 453 --GEHTINNK 476
G+ T NK
Sbjct: 371 LDGKDTYGNK 380
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 34.3 bits (75), Expect = 0.024
Identities = 18/67 (26%), Positives = 34/67 (50%)
Frame = +3
Query: 468 NNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCF 647
+NKK + ++ +R +++ GL SD+ + + + FG + + D N KG+ F
Sbjct: 283 DNKKSN-MESTSRTRNVYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGF 341
Query: 648 ITFESEQ 668
FE E+
Sbjct: 342 ACFEEEK 348
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 33.1 bits (72), Expect = 0.056
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +3
Query: 516 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 656
I V L+ ++ + I F +G I + MP K KG+C+I +
Sbjct: 101 ILVENLTRNVTKEHIAEIFGIYGLIDHIFMPIYKKSELNKGYCYIEY 147
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 32.7 bits (71), Expect = 0.074
Identities = 14/57 (24%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +3
Query: 489 KKAKARHGKIF-VGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 656
+ AK+ G I V G+ E +++++ + F++FG + + + D+ KG+ I +
Sbjct: 2 RPAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEY 58
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 32.7 bits (71), Expect = 0.074
Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = +3
Query: 264 DDRKLFVGGLSWETTDKELRDHF-GAYGEIESINVKTDPNTGRSRGFAFIVFKAP 425
++ K+ V L + T+ ++++ F + G + +++ PN GRS+G A I+F P
Sbjct: 53 EESKIIVSNLPTDVTEAQVKELFVKSIGPCKRVSLAYGPN-GRSKGIATIIFSRP 106
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 32.3 bits (70), Expect = 0.097
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +3
Query: 270 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPN 380
R +F+G L +KE+ + FG +G+IE I + + N
Sbjct: 299 RNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSKKN 335
Score = 26.2 bits (55), Expect = 6.4
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +3
Query: 516 IFVGGLSSEISDDEIRNFFSEFGTILEVEM 605
+F+G L S + EI F +FG I +++
Sbjct: 301 VFIGNLPSSYHEKEIEEAFGKFGKIEHIKI 330
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 31.9 bits (69), Expect = 0.13
Identities = 16/69 (23%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +3
Query: 312 KELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP-ESIDKVMAAGEHTINNKKVDP 488
++L + F +G I+S + + P+T S+G+ F+ F P E++ + K++
Sbjct: 435 QQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAINTLNGVLFGKKRLFV 494
Query: 489 KKAKARHGK 515
A+ R +
Sbjct: 495 NYAEKREDR 503
Score = 27.9 bits (59), Expect = 2.1
Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 6/80 (7%)
Frame = +3
Query: 444 MAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTK 623
M A E K KK + I+VG L S ++ F FG + M + K
Sbjct: 1 MIALEKLSEKNKRSTKKCEI---SIYVGNLPSTCQSSDLHELFEPFGNFSKFHM-LSRKK 56
Query: 624 NQRKG------FCFITFESE 665
N+ F FITFE++
Sbjct: 57 NKSTDSKSPTLFAFITFENK 76
>SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 354
Score = 30.3 bits (65), Expect = 0.39
Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 1/106 (0%)
Frame = +3
Query: 246 EAPGRXDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP 425
E P LF+ G+ E D ++R HF YG ++S+ + R++ AF+ FK
Sbjct: 204 EPPKDKKIASLFLIGVEDELADYKIRKHFEQYGPLKSVVC-----SHRAK-CAFVNFKTR 257
Query: 426 ESIDKVMAAGEHTINNKKVDPKKAKARHGK-IFVGGLSSEISDDEI 560
S + +AA N ++ + K + GK +GG E+ + ++
Sbjct: 258 SSAE--IAAAASPDGNVVIEGFRLKVQWGKPRSLGGPEGEVRNAKL 301
>SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein
Cwf23|Schizosaccharomyces pombe|chr 3|||Manual
Length = 289
Score = 30.3 bits (65), Expect = 0.39
Identities = 12/43 (27%), Positives = 26/43 (60%)
Frame = +3
Query: 534 SSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 662
+ +++D +R+ +S FGT+ V + D +K ++ + I FE+
Sbjct: 176 ADQVNDAYLRSIYSSFGTLQNVVIQKDISKEKKYVYSIIVFET 218
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 28.7 bits (61), Expect = 1.2
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +3
Query: 270 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPN 380
R +F+G L T+ E+R+ +G I+ I + T+ N
Sbjct: 206 RNVFLGNLPNGITEDEIREDLEPFGPIDQIKIVTERN 242
Score = 28.3 bits (60), Expect = 1.6
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +3
Query: 237 NSAEAPGRXDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPN 380
N A A R +++G T + L++ F +GEIE +N + N
Sbjct: 403 NIALAVAGGASRNIYIGNADDSLTIERLKEDFEEFGEIEYVNFFREKN 450
Score = 27.9 bits (59), Expect = 2.1
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +3
Query: 516 IFVGGLSSEISDDEIRNFFSEFGTILEVEM 605
+F+G L + I++DEIR FG I ++++
Sbjct: 208 VFLGNLPNGITEDEIREDLEPFGPIDQIKI 237
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 28.7 bits (61), Expect = 1.2
Identities = 13/54 (24%), Positives = 26/54 (48%)
Frame = +3
Query: 480 VDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGF 641
+ P K +F+GG++ + + +R+ F FG++ + + N R GF
Sbjct: 396 IPPDSIKVYSRTLFLGGITRSVREPVLRSMFERFGSVQSLIL----NHNYRHGF 445
>SPAC2G11.03c |vps45||vacuolar sorting protein Vps
45|Schizosaccharomyces pombe|chr 1|||Manual
Length = 558
Score = 28.7 bits (61), Expect = 1.2
Identities = 15/72 (20%), Positives = 32/72 (44%)
Frame = +3
Query: 321 RDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAK 500
R++ GE+E V +P + ++F K+ A +++ +++DP K
Sbjct: 344 RENLLEVGEVEQSLVCNEPQSTDFNDIQRLLFSNISENTKLRLAALYSLRFERIDPAKVS 403
Query: 501 ARHGKIFVGGLS 536
A + GG++
Sbjct: 404 ALQQMLIAGGVN 415
>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1150
Score = 27.9 bits (59), Expect = 2.1
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = +3
Query: 486 PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKN 626
P++ + +GK L+S ++E+RN FSEF LE E+ F+ ++
Sbjct: 946 PEEIRKLNGKKI---LNSFFDNEELRNEFSEFIQHLESEVSFNSLRS 989
>SPAC1952.05 |gcn5||histone acetyltransferase
Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 27.5 bits (58), Expect = 2.8
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +3
Query: 393 RGFAFIVFKAPESIDKVMAAGEHTINNKK 479
RGFA IVF A S ++V G H +N+ K
Sbjct: 187 RGFAEIVFCAIASNEQVRGYGSHLMNHLK 215
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 26.2 bits (55), Expect = 6.4
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 267 DRKLFVGGLSWETTDKELRDHFGAYGEI 350
+ +LFVG + + T +++ D F YG+I
Sbjct: 3 ETRLFVGRIPPQATREDMMDFFKGYGQI 30
>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 589
Score = 26.2 bits (55), Expect = 6.4
Identities = 9/20 (45%), Positives = 17/20 (85%)
Frame = +3
Query: 546 SDDEIRNFFSEFGTILEVEM 605
+++ IR+FFS+FG + +VE+
Sbjct: 255 NEENIRSFFSKFGVLEKVEL 274
>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 25.8 bits (54), Expect = 8.5
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = -2
Query: 500 FSLLWVYFLVVDGVFTSSHDLVY*LWGLKHNEGKPS*SACVWICLYINTLYFTV 339
F+LL L + GV Y ++ + H+ G P WICL+ +F +
Sbjct: 85 FALLSSQPLCIVGVTGPITVFNYTVYDIMHDRGTPYFPFLCWICLWSMIFHFII 138
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,590,248
Number of Sequences: 5004
Number of extensions: 48308
Number of successful extensions: 224
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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