Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_N06
         (971 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       29   0.063
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    24   2.4  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    24   2.4  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    24   2.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   4.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   4.2  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   5.5  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 29.1 bits (62), Expect = 0.063
 Identities = 15/36 (41%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
 Frame = +2

Query: 791 PSP-PXPPXKPXXPQXPAPPXP-QXPXSPXXPNPPP 892
           P P P P   P  PQ  +PP P Q P     P  PP
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 24.6 bits (51), Expect = 1.4
 Identities = 11/34 (32%), Positives = 11/34 (32%)
 Frame = +1

Query: 859 PXLPPXXXPPPXPXXXXPXSXXGPPPSGXXXPPP 960
           P   P   P        P    GPPP G    PP
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 22.2 bits (45), Expect = 7.3
 Identities = 13/48 (27%), Positives = 13/48 (27%)
 Frame = +1

Query: 799 PXPPPKAXXPXXXRAPXXXXPXLPPXXXPPPXPXXXXPXSXXGPPPSG 942
           P P P        R         PP   PP  P    P      P SG
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNPSQMMISPASG 70


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.8 bits (49), Expect = 2.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 142 NYAYCFHNTFYNNSKINSIL 83
           NY Y ++N  YNN+  N  L
Sbjct: 93  NYKYNYNNNNYNNNNYNKKL 112


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.8 bits (49), Expect = 2.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 142 NYAYCFHNTFYNNSKINSIL 83
           NY Y ++N  YNN+  N  L
Sbjct: 93  NYKYNYNNNNYNNNNYNKKL 112


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 2.4
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 142 NYAYCFHNTFYNNSKINS 89
           NY Y ++N  YNN+  N+
Sbjct: 328 NYKYNYNNNNYNNNNYNN 345


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 4.2
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -3

Query: 348 THPLAPPSFIVMYMD 304
           THP A P FI  Y D
Sbjct: 356 THPQAGPHFITWYKD 370



 Score = 21.8 bits (44), Expect = 9.6
 Identities = 10/25 (40%), Positives = 10/25 (40%)
 Frame = -3

Query: 891  GGGXGXXGEXGXXGXGGAGXXGXXG 817
            GGG    G  G  G GGA      G
Sbjct: 1705 GGGGSLAGLGGLGGLGGAAEASAAG 1729


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 4.2
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -3

Query: 348 THPLAPPSFIVMYMD 304
           THP A P FI  Y D
Sbjct: 356 THPQAGPHFITWYKD 370



 Score = 21.8 bits (44), Expect = 9.6
 Identities = 10/25 (40%), Positives = 10/25 (40%)
 Frame = -3

Query: 891  GGGXGXXGEXGXXGXGGAGXXGXXG 817
            GGG    G  G  G GGA      G
Sbjct: 1701 GGGGSLAGLGGLGGLGGAAEASAAG 1725


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 5.5
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +1

Query: 790 PXPPXPPPKAXXP 828
           P PP PPP +  P
Sbjct: 341 PAPPPPPPSSSGP 353


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,452
Number of Sequences: 438
Number of extensions: 5784
Number of successful extensions: 32
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 32048835
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)