Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP19_F_N05
(915 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe... 31 0.30
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces... 30 0.53
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 28 2.1
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|... 27 3.7
SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ... 27 3.7
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz... 27 3.7
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |... 27 4.9
SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual 26 6.5
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1... 26 6.5
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos... 26 8.6
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 26 8.6
SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S... 26 8.6
>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 848
Score = 30.7 bits (66), Expect = 0.30
Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 1/98 (1%)
Frame = +2
Query: 401 PISKPIQGGYIKEEKFNLPTSLENASVTFPEVIPQQRTQ-VQNQPMIFQQVVQSPVFVNL 577
P + Y+ +K + + + ASV T+ + +P+I Q ++ P ++L
Sbjct: 378 PFIQSTLADYVSSDKISKNVNADEASVKGAAFYGASLTKSFRVKPLIVQDIINYPYLLSL 437
Query: 578 GPAGNIQPMPDKRSNVIQVDNVPQANKTSPLKQQSQPL 691
G + I +PD +Q NV N ++ K S PL
Sbjct: 438 GTSEYIVALPDSTPYGMQ-HNVTIHNVSTIGKHPSFPL 474
>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 711
Score = 29.9 bits (64), Expect = 0.53
Identities = 21/76 (27%), Positives = 33/76 (43%)
Frame = +2
Query: 560 PVFVNLGPAGNIQPMPDKRSNVIQVDNVPQANKTSPLKQQSQPLLIQNNPKGVPFILKSS 739
P+ + A + PD++ N V N PQ P +S P +N + P S
Sbjct: 248 PISPAISCASSCPSTPDEQKNFFIVGNAPQQTPARP-SLRSVPSYPSSNNQRRP--SASR 304
Query: 740 DSNFSPVLLQSNIINP 787
+FS + SN++NP
Sbjct: 305 VRSFSNYVKSSNVVNP 320
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 27.9 bits (59), Expect = 2.1
Identities = 32/141 (22%), Positives = 53/141 (37%), Gaps = 3/141 (2%)
Frame = +2
Query: 329 VSPNYNHTGNPVMSQHTHRIRPTPPISKPIQGGYIKEEKFNLPTSLENASVTFPEVIPQQ 508
V+P Y TG PV + + R+ + + Y + L + N + P V
Sbjct: 71 VTPEYGATGTPVNANNASRVDYATTAAN-VPEEYANDYSSEL-AYIHNVN-DMPHVDGLS 127
Query: 509 RTQVQNQPMIFQQVVQS-PVFVNLGP-AGNIQPMPDKRSNVIQVDNVPQANKTSP-LKQQ 679
QP +F+ QS P+ + P A + P ++ + P AN SP +
Sbjct: 128 NHSPATQPDLFETPAQSDPILFSSYPHAAQARVDPSISKDLYNMVPRPDANTVSPHAARS 187
Query: 680 SQPLLIQNNPKGVPFILKSSD 742
+ L + PF S+D
Sbjct: 188 ASSLPVPKEASETPFRDASTD 208
>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 27.1 bits (57), Expect = 3.7
Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Frame = +2
Query: 371 QHTHRIRPTPPISKPIQGGYIKE---EKFNLPTSLENASVTFPEVIPQQRTQV 520
Q TH RPTP S P+ ++ N PT + T PE + T V
Sbjct: 589 QQTHSSRPTPNASSPLDVRSKQKPSSANSNAPTPAPTVNTTNPESSTNEATSV 641
>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 937
Score = 27.1 bits (57), Expect = 3.7
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Frame = +2
Query: 632 VDNVPQANKTSPLKQQSQPLLIQNNPKGVPFILKSSDSN----FSPVLLQSNIINPKTQT 799
VD + N K++ QPL PKG+ ILK N + V+ +SNI+
Sbjct: 120 VDGFCETNLGKLTKREGQPLFTACTPKGIMCILKHYGINVQGKHAVVIGRSNIVGRPMSI 179
Query: 800 LM 805
L+
Sbjct: 180 LL 181
>SPCC1795.08c |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 985
Score = 27.1 bits (57), Expect = 3.7
Identities = 20/68 (29%), Positives = 29/68 (42%)
Frame = +2
Query: 314 SSSPQVSPNYNHTGNPVMSQHTHRIRPTPPISKPIQGGYIKEEKFNLPTSLENASVTFPE 493
S SP SP H V + T I PT P+ + + +EEK L E A+ E
Sbjct: 140 SKSPIPSPETIHKNIDVEEKET--IEPTTPVKEVETTAHAEEEKGPLTPDSEYAARQLTE 197
Query: 494 VIPQQRTQ 517
+ + +Q
Sbjct: 198 ELANKSSQ 205
>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 26.6 bits (56), Expect = 4.9
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Frame = +2
Query: 311 ISSSPQVSPNYNHTGNPVMSQHTHRIRPTPPISKPIQGGYIKEEKFNL----PTSLENAS 478
ISS+P + P+ T + S ++ + PP++ + K++L P SL NA+
Sbjct: 290 ISSTPFMKPSIPSTIPTIPSAYSASVSSQPPLTHSYVHPGPQSHKYSLSSGPPASLYNAN 349
Query: 479 VTFPE 493
PE
Sbjct: 350 ALTPE 354
>SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 483
Score = 26.2 bits (55), Expect = 6.5
Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Frame = +2
Query: 260 NTNETGLLDIDTKCKPEISSSPQVSPNY-NHTGNPVMSQHTHRIRPTPPISKPIQGG 427
N N + D+ K P +S + +Y + NP + H P PP P G
Sbjct: 105 NDNNYSISDLSIKSPPPSLTSDWIVDSYASDQDNPSVHTHNRTTPPIPPPHLPNASG 161
>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1023
Score = 26.2 bits (55), Expect = 6.5
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Frame = +2
Query: 332 SPNYNH---TGNPVMSQHTHRIRPTPPISKPIQGGYIKEEKFNL-PTSLENASVTFPEVI 499
S N H TG+ +S H P+SKP + + E++ L T L S+T E+
Sbjct: 329 SKNQGHVSMTGSDKLSSHVQSETENAPVSKPSKPNTLTEDEKPLQSTKLPGNSLTVGELY 388
Query: 500 PQQRT 514
+ ++
Sbjct: 389 QEPKS 393
>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 953
Score = 25.8 bits (54), Expect = 8.6
Identities = 14/54 (25%), Positives = 25/54 (46%)
Frame = +2
Query: 218 DFMTKLEQELTFVDNTNETGLLDIDTKCKPEISSSPQVSPNYNHTGNPVMSQHT 379
D ++K + + + + L +D SSS + NHTGN ++S+ T
Sbjct: 668 DVVSKNKDNIAILADREARPQLLLDDNNDSSSSSSEHLISFNNHTGNKILSRQT 721
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 25.8 bits (54), Expect = 8.6
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +2
Query: 428 YIKEEKFNLPTSLENASVTFPEVIP 502
YI F +P +LEN S E++P
Sbjct: 1124 YISNPIFQIPLTLENGSSAMVEILP 1148
>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 517
Score = 25.8 bits (54), Expect = 8.6
Identities = 24/97 (24%), Positives = 37/97 (38%), Gaps = 1/97 (1%)
Frame = +2
Query: 368 SQHTHRIRPTPPISKPIQGGYIKEEKFNLPTSLENASVTFPEVIPQQRTQVQNQ-PMIFQ 544
S H I+P P+ + FN TS +S + +Q NQ +
Sbjct: 185 SSKCHEIKPLTTREIPLARKRSRLNSFNSSTSTSGSSSNVAAEVSNDASQPSNQDSSLNS 244
Query: 545 QVVQSPVFVNLGPAGNIQPMPDKRSNVIQVDNVPQAN 655
+V+ P+ P N+Q SN +NVP+ N
Sbjct: 245 NIVKPPL-----PPSNVQ------SNSSSSENVPKPN 270
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,843,558
Number of Sequences: 5004
Number of extensions: 84478
Number of successful extensions: 248
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 248
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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