Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP19_F_N05
(915 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0529 + 3874865-3876285,3876352-3876367 31 0.97
02_05_0075 - 25610386-25610508,25610529-25610583,25610801-256112... 30 2.2
05_06_0273 - 26851077-26851167,26851433-26851869,26852125-268522... 30 2.9
08_02_0516 + 18080706-18080760,18081796-18081885,18082479-180825... 29 3.9
01_01_0411 - 3096593-3097402 29 5.2
07_03_0982 + 23116343-23117089,23117227-23117313,23117424-231175... 28 9.0
>01_01_0529 + 3874865-3876285,3876352-3876367
Length = 478
Score = 31.5 bits (68), Expect = 0.97
Identities = 17/68 (25%), Positives = 33/68 (48%)
Frame = +2
Query: 287 IDTKCKPEISSSPQVSPNYNHTGNPVMSQHTHRIRPTPPISKPIQGGYIKEEKFNLPTSL 466
I T+ + E + ++ + G+ S+ HR +PTP I GG+ + ++ + SL
Sbjct: 3 IPTETETETGTGARIPSHRRRKGSSDGSRAVHRRKPTPTKETEIPGGHGRPKRSSSALSL 62
Query: 467 ENASVTFP 490
+ A + P
Sbjct: 63 DGAGDSNP 70
>02_05_0075 -
25610386-25610508,25610529-25610583,25610801-25611240,
25612951-25613619,25614551-25615870
Length = 868
Score = 30.3 bits (65), Expect = 2.2
Identities = 37/128 (28%), Positives = 55/128 (42%), Gaps = 9/128 (7%)
Frame = +2
Query: 311 ISSSPQVSPNYNHTGNPVMSQHTHRIRPTPPISKPI-QGGYIKEEKFNLPTSLE--NASV 481
+SS+P SP+ + NP MS + PP S+ I Y P L S
Sbjct: 75 LSSAP-ASPDSSSVSNP-MSPPAMSLPNQPPSSRHIFPFAYDPSPGAAAPRLLPLLQYSS 132
Query: 482 TFPE-VIPQQRTQVQNQPMIF-----QQVVQSPVFVNLGPAGNIQPMPDKRSNVIQVDNV 643
+P+ ++PQQ++ +QNQ MI QQ Q P F P Q +P + + +
Sbjct: 133 LYPQPLLPQQQSPLQNQQMISFGSSQQQQQQQPQFGAASPLFPPQFLPPEEQQRLLLRYW 192
Query: 644 PQANKTSP 667
+A SP
Sbjct: 193 SEALNLSP 200
>05_06_0273 - 26851077-26851167,26851433-26851869,26852125-26852271,
26852352-26854415,26854792-26854908,26855007-26855093,
26855350-26855439,26855523-26855609,26856736-26856810
Length = 1064
Score = 29.9 bits (64), Expect = 2.9
Identities = 41/164 (25%), Positives = 66/164 (40%), Gaps = 7/164 (4%)
Frame = +2
Query: 209 CDGDFMTKLEQELTFVDNTNETGLL---DIDTKCKPEISSSPQVSPNYNHT---GNPVMS 370
CD FM + + + N+ ++ ID K K E P++ P+ T PV
Sbjct: 677 CDSCFMKLKAADTGVISSYNKRNVITRRSIDIKDKLE---RPEIRPSRLATTSPAEPVKY 733
Query: 371 QHTHRIRPTPPISKPIQGGYIKEEKFNLPTSLENASVTFPEVIPQQRTQVQNQPMIFQQV 550
Q T +R + P+ +K + +P L+ + F T V++ M Q
Sbjct: 734 QETKNVRNETKPADPMS--MMKASQ--VPAMLQFKDMAFAGTFGTVPTTVKSMTMGGQMQ 789
Query: 551 VQSPVFVNLGPAGNIQPMPDKRSNVI-QVDNVPQANKTSPLKQQ 679
+ P+F P+ P P S +I +VDN KT+ L Q
Sbjct: 790 MGMPMFSPSPPSKKPSPPPATASPLIGKVDN-DGLKKTNELLNQ 832
>08_02_0516 +
18080706-18080760,18081796-18081885,18082479-18082573,
18083658-18083726,18083812-18084393
Length = 296
Score = 29.5 bits (63), Expect = 3.9
Identities = 22/67 (32%), Positives = 30/67 (44%)
Frame = +2
Query: 500 PQQRTQVQNQPMIFQQVVQSPVFVNLGPAGNIQPMPDKRSNVIQVDNVPQANKTSPLKQQ 679
PQQ Q+Q QP + QQ Q P L P + P P + +Q+ + P + Q
Sbjct: 211 PQQPPQLQPQPQLLQQ-PQLP--QQLQPQSQLPPQPQQPPQ-LQLQSQLHPQPQQPPQLQ 266
Query: 680 SQPLLIQ 700
QP L Q
Sbjct: 267 PQPQLHQ 273
>01_01_0411 - 3096593-3097402
Length = 269
Score = 29.1 bits (62), Expect = 5.2
Identities = 39/162 (24%), Positives = 63/162 (38%), Gaps = 6/162 (3%)
Frame = +2
Query: 392 PTPPISKP--IQGGYIKEEKFNLPTSLENASVTFPEVIPQQRTQVQNQPMIFQQVVQSPV 565
P P +K I G K +FN L S E I Q +N +F +
Sbjct: 45 PAPASTKTTNITGVLAKAGQFNTLIRLMR-STGAAEQIDNQLNSSRNGLTVFAPTDNA-- 101
Query: 566 FVNLGPAGNIQPMPDKRSN-VIQVDNVPQANKTSPLKQQSQPLLIQ---NNPKGVPFILK 733
F +L P+G + + D++ N ++Q + S S PL Q N+P P +
Sbjct: 102 FTSL-PSGTLNSLSDQQKNSLVQYHVLSTLIPMSQFDTVSNPLRTQAGSNSPGQYPLNVT 160
Query: 734 SSDSNFSPVLLQSNIINPKTQTLMYTSTPLQVSSTXQILLQM 859
+ V + + ++N +YT L V ++LL M
Sbjct: 161 AEGQQ---VNISTGVVNATVGNALYTGDNLVVYQVDKVLLPM 199
>07_03_0982 +
23116343-23117089,23117227-23117313,23117424-23117555,
23118135-23118269,23118644-23118709,23118797-23118907,
23119237-23119329,23119555-23119659,23119752-23119829
Length = 517
Score = 28.3 bits (60), Expect = 9.0
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Frame = +2
Query: 305 PEISSSPQVSPNYNHTGNPVMSQHTHRIRPTP---PISKPIQGGY 430
PE S +P +Y T V +QH P+P P P GGY
Sbjct: 90 PESSPAPAPYYSYPPTAAGVATQHAPAAEPSPAPLPYDAPYYGGY 134
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,208,673
Number of Sequences: 37544
Number of extensions: 484897
Number of successful extensions: 1266
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1266
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2600672280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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