Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_N05
         (915 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    26   0.42 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   1.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   1.3  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    24   1.7  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    24   1.7  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   5.1  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   6.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   6.8  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   6.8  

>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 26.2 bits (55), Expect = 0.42
 Identities = 14/45 (31%), Positives = 18/45 (40%)
 Frame = -1

Query: 897 KCVYGCCLRSCLCICNNIWXVLETCNGVLVYINVCVFGLMIFDCN 763
           KC YG  + S   I        E C G   Y+ +C  G+    CN
Sbjct: 45  KCKYGIAMSSACGIVQCAKGPDELCGGPQNYLGICAEGMQC-SCN 88


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -2

Query: 302 CISYQCPTALFHLYCPQKLVPVLILS 225
           C++  CPT  +  Y      P+L+LS
Sbjct: 259 CVAQACPTPEYRWYAQTGSEPMLVLS 284


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -2

Query: 302 CISYQCPTALFHLYCPQKLVPVLILS 225
           C++  CPT  +  Y      P+L+LS
Sbjct: 259 CVAQACPTPEYRWYAQTGSEPMLVLS 284


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 13/40 (32%), Positives = 16/40 (40%)
 Frame = +2

Query: 137 IDPFMNADVFNVHDIAEIEDFLNNCDGDFMTKLEQELTFV 256
           + PF    +  V      E FL  C  DF+T  E    FV
Sbjct: 182 VTPFTVLPLLKVWGRYTTEGFLTTCSFDFLTDDEDTKVFV 221


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 13/40 (32%), Positives = 16/40 (40%)
 Frame = +2

Query: 137 IDPFMNADVFNVHDIAEIEDFLNNCDGDFMTKLEQELTFV 256
           + PF    +  V      E FL  C  DF+T  E    FV
Sbjct: 182 VTPFTVLPLLKVWGRYTTEGFLTTCSFDFLTDDEDTKVFV 221


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 176 DIAEIEDFLNNCDGDFMTKLEQELTF 253
           DI  +  +LN   GDF T  E ++TF
Sbjct: 202 DIINVPAYLNTYKGDFPT--ETDITF 225


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = -1

Query: 711 LGLFCISRG*LCCFRGLVLFACG--TLST*MTFDLLSGIGWIF 589
           +GLFCI+ G +  F+ L  +A     L   M F+ ++ I W F
Sbjct: 429 IGLFCITEGGMYVFQLLDSYAVSGFCLLFLMFFECIA-ISWAF 470


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = -1

Query: 711 LGLFCISRG*LCCFRGLVLFACG--TLST*MTFDLLSGIGWIF 589
           +GLFCI+ G +  F+ L  +A     L   M F+ ++ I W F
Sbjct: 482 IGLFCITEGGMYVFQLLDSYAVSGFCLLFLMFFECIA-ISWAF 523


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 555 RAPCLLIWVRLEISNLCLTKGQMSFKLI 638
           R PC  + V L +S+LC+    M   L+
Sbjct: 73  RRPCNYLLVSLAVSDLCVALLVMPMALL 100


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 262,948
Number of Sequences: 438
Number of extensions: 6406
Number of successful extensions: 17
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29750994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)