Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_N04
         (958 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.13c |fps1||geranyltranstransferase Fps1|Schizosaccharom...   138   1e-33
SPBC36.06c |spo9||farnesyl pyrophosphate synthetase|Schizosaccha...    92   1e-19
SPAPB24D3.04c |mag1||DNA-3-methyladenine glycosylase Mag1|Schizo...    32   0.10 
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|...    30   0.55 
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p...    29   0.97 
SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s...    29   0.97 
SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein] reductase|Schiz...    28   2.2  
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom...    27   3.9  
SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces ...    27   3.9  

>SPAC6F12.13c |fps1||geranyltranstransferase
           Fps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 347

 Score =  138 bits (333), Expect = 1e-33
 Identities = 70/176 (39%), Positives = 104/176 (59%), Gaps = 1/176 (0%)
 Frame = +3

Query: 24  IGNSLRFYTLPE-LGSWVKKVLEYNVKGGKKIRGITTVLAYELFEKPENVTEEMVRLARV 200
           I N L+   +P+ +  W K  L +N  GGK  RG++ + +YE+      + E     A V
Sbjct: 21  IVNYLKTINIPDDVTEWYKNSLFHNTLGGKYNRGLSVIDSYEIL-LGHPLDEAAYMKAAV 79

Query: 201 AGWCTEMLQAYLIMNDDIMDGSSTRRGVPCWYRMPDVGLGAINDAILVYGSIYEILKIYF 380
            GW  E+LQ++ ++ DDIMD S TRRG PCWY MP VG  AINDA +V  +IY +LK +F
Sbjct: 80  LGWMVELLQSFFLIADDIMDASKTRRGQPCWYLMPGVGNIAINDAFMVESAIYFLLKKHF 139

Query: 381 GKAKEYADILDIFNEALLYTSMGQHLDYAMAHRNKQDYSLFTTERYYSIVKYKTSF 548
            +   Y D++++F++    T +GQ LD   A  +  D S F+ +++  IV YKT+F
Sbjct: 140 RQESCYVDLIELFHDVTFQTELGQQLDLLTAPEDSVDLSKFSLQKHSFIVIYKTAF 195


>SPBC36.06c |spo9||farnesyl pyrophosphate
           synthetase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 351

 Score = 91.9 bits (218), Expect = 1e-19
 Identities = 54/155 (34%), Positives = 77/155 (49%)
 Frame = +3

Query: 84  LEYNVKGGKKIRGITTVLAYELFEKPENVTEEMVRLARVAGWCTEMLQAYLIMNDDIMDG 263
           ++ N  GGK  RG+  + +       E + E   R A + GW  E+LQ   +M DDIMD 
Sbjct: 47  IKRNTLGGKNNRGLAVLQSLTSLINRE-LEEAEFRDAALLGWLIEILQGCFLMADDIMDQ 105

Query: 264 SSTRRGVPCWYRMPDVGLGAINDAILVYGSIYEILKIYFGKAKEYADILDIFNEALLYTS 443
           S  RRG+ CWY +  V   AIN++ L+   I  +++ YF     Y D+LD F E    T 
Sbjct: 106 SIKRRGLDCWYLVVGVRR-AINESQLLEACIPLLIRKYFRNMPYYVDLLDTFREVTFLTE 164

Query: 444 MGQHLDYAMAHRNKQDYSLFTTERYYSIVKYKTSF 548
           +GQ  D   +   +     F   +Y  I+ YKTSF
Sbjct: 165 LGQQEDLLSSRDGEASLRSFDLMKYDFIITYKTSF 199


>SPAPB24D3.04c |mag1||DNA-3-methyladenine glycosylase
           Mag1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 228

 Score = 32.3 bits (70), Expect = 0.10
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +3

Query: 162 ENVTEEMVRLARVAGWCTEMLQAYLIMNDDIM--DGSSTRRGVPCWYRMPDV 311
           E + E + ++  +  W  EML  + +  DD+M  D  S R G    +R+P +
Sbjct: 135 EELIERLTQIKGIGRWTVEMLLIFSLNRDDVMPADDLSIRNGYRYLHRLPKI 186


>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 927

 Score = 29.9 bits (64), Expect = 0.55
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 152 RETGKRYRRDGEVSTCRRLVYGNATGVLDNE 244
           +E GKR+     + TC RL Y  A GV++ +
Sbjct: 545 KEIGKRWFGKTVIKTCARLAYSEAQGVIEGK 575


>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 584

 Score = 29.1 bits (62), Expect = 0.97
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -2

Query: 294 TSTGPRAGSTTRPLYRRSLS-STPVAFPYTNRRHVLTSPS 178
           +S  PR G +  P+  RS +      FPY N+R+ +T+PS
Sbjct: 450 SSEMPRTGMSALPMRPRSQNVDKHRKFPYYNKRNAVTTPS 489


>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
           subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 29.1 bits (62), Expect = 0.97
 Identities = 13/40 (32%), Positives = 25/40 (62%)
 Frame = +3

Query: 168 VTEEMVRLARVAGWCTEMLQAYLIMNDDIMDGSSTRRGVP 287
           +    +RLA++    TEM+    +++DD++D ++ RRG P
Sbjct: 115 ILPSQLRLAQI----TEMIHIASLLHDDVIDHANVRRGSP 150


>SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein]
           reductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 372

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
 Frame = +3

Query: 102 GGKKIRGITTV-LAYELFEKPENVTEEMVRLARVAGWCTEMLQAYLIMNDDIMDGSSTRR 278
           G   + GI T+ LA     K  NV      + ++      +    +I ++++MD  + ++
Sbjct: 181 GANSMVGIATIQLAKHFGYKSINVVRNRPDIEKLKEQLKSLGATIVITDEELMDRKTMKQ 240

Query: 279 GVPCWYRMPDVGLG 320
            VP W +  +V LG
Sbjct: 241 KVPEWIQGGEVKLG 254


>SPBC713.04c |||U3 snoRNP-associated protein
           Utp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 854

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = +1

Query: 349 VLYTKYSRYISGKLKNTQTSWTFSTRLF-SIRAWDSI*ITPWRTATNKTTV 498
           V +T+++  +SG   + + +  FS+ L  S+RAWD I    +RT T  + V
Sbjct: 375 VTFTQHTSAVSGLCFSKRGNVLFSSSLDGSVRAWDLIRYRNFRTFTAPSRV 425


>SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 14/36 (38%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
 Frame = +3

Query: 87  EYNVKGGKK-IRGITTVLAYELFEKPENVTEEMVRL 191
           E+++K  K+ I+ ITT+L +E F+K   V E++ R+
Sbjct: 275 EFSLKLNKRDIKMITTLLQFEGFQKEPVVREQLQRM 310


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,391,933
Number of Sequences: 5004
Number of extensions: 50137
Number of successful extensions: 158
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 489310570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)