Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP19_F_N04
(958 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
J05262-1|AAA52423.1| 353|Homo sapiens FDPS protein. 153 1e-36
M29863-1|AAA35820.1| 346|Homo sapiens protein ( Human farnesyl ... 152 2e-36
D14697-1|BAA03523.2| 420|Homo sapiens KIAA1293 protein. 152 2e-36
BC010004-1|AAH10004.1| 419|Homo sapiens farnesyl diphosphate sy... 152 2e-36
AL139410-1|CAI12715.1| 419|Homo sapiens farnesyl diphosphate sy... 152 2e-36
Z47055-1|CAA87327.1| 348|Homo sapiens farnesyl pyrophosphate sy... 140 9e-33
BC050292-1|AAH50292.1| 298|Homo sapiens LOC619190 protein protein. 123 1e-27
BC067768-1|AAH67768.1| 300|Homo sapiens GGPS1 protein protein. 40 0.018
BC005252-1|AAH05252.1| 300|Homo sapiens geranylgeranyl diphosph... 40 0.018
AL391994-8|CAI13753.1| 300|Homo sapiens geranylgeranyl diphosph... 40 0.018
AF125394-1|AAD43050.1| 300|Homo sapiens gerannylgeranyl pyropho... 40 0.018
AF057698-1|AAG45581.1| 300|Homo sapiens geranylgeranyl pyrophos... 40 0.018
AB019036-1|BAA77251.1| 300|Homo sapiens geranylgeranyl pyrophos... 40 0.018
AB017971-1|BAA75909.1| 300|Homo sapiens geranylgeranyl diphosph... 40 0.018
AB016043-1|BAA76511.1| 300|Homo sapiens GGPP synthase protein. 40 0.018
BC063635-1|AAH63635.1| 306|Homo sapiens PDSS1 protein protein. 34 0.88
BC049211-1|AAH49211.1| 414|Homo sapiens PDSS1 protein protein. 34 0.88
AL390961-9|CAI17280.1| 415|Homo sapiens trans-prenyltransferase... 34 0.88
AF118395-1|AAD28559.1| 376|Homo sapiens trans-prenyltransferase... 34 0.88
AB210838-1|BAE48216.1| 415|Homo sapiens subunit 1 of decaprenyl... 34 0.88
AB209763-1|BAD93000.1| 297|Homo sapiens trans-prenyltransferase... 34 0.88
AK223414-1|BAD97134.1| 415|Homo sapiens trans-prenyltransferase... 33 2.0
>J05262-1|AAA52423.1| 353|Homo sapiens FDPS protein.
Length = 353
Score = 153 bits (370), Expect = 1e-36
Identities = 75/168 (44%), Positives = 105/168 (62%), Gaps = 3/168 (1%)
Frame = +3
Query: 54 PELGSWV---KKVLEYNVKGGKKIRGITTVLAYELFEKPENVTEEMVRLARVAGWCTEML 224
PE+G + K+VLEYN GGK RG+T V+A+ +P + ++ A GWC E+L
Sbjct: 36 PEIGDAIARLKEVLEYNAIGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGWCVELL 95
Query: 225 QAYLIMNDDIMDGSSTRRGVPCWYRMPDVGLGAINDAILVYGSIYEILKIYFGKAKEYAD 404
QA+ ++ DDIMD S TRRG CWY+ P VGL AINDA L+ IY +LK+Y + Y +
Sbjct: 96 QAFFLVADDIMDSSLTRRGQTCWYQKPGVGLDAINDANLLEACIYRLLKLYCREQPYYLN 155
Query: 405 ILDIFNEALLYTSMGQHLDYAMAHRNKQDYSLFTTERYYSIVKYKTSF 548
++++F ++ T +GQ LD A + D FT +RY SIVKYKT+F
Sbjct: 156 LIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKTAF 203
>M29863-1|AAA35820.1| 346|Homo sapiens protein ( Human farnesyl
pyrophosphate synthetase mRNA (hpt807), 3' end. ).
Length = 346
Score = 152 bits (368), Expect = 2e-36
Identities = 75/168 (44%), Positives = 105/168 (62%), Gaps = 3/168 (1%)
Frame = +3
Query: 54 PELGSWV---KKVLEYNVKGGKKIRGITTVLAYELFEKPENVTEEMVRLARVAGWCTEML 224
PE+G + K+VLEYN GGK RG+T V+A+ +P + ++ A GWC E+L
Sbjct: 29 PEIGDAIARLKEVLEYNAIGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGWCVELL 88
Query: 225 QAYLIMNDDIMDGSSTRRGVPCWYRMPDVGLGAINDAILVYGSIYEILKIYFGKAKEYAD 404
QA+ ++ DDIMD S TRRG CWY+ P VGL AINDA L+ IY +LK+Y + Y +
Sbjct: 89 QAFFLVADDIMDSSLTRRGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQPYYLN 148
Query: 405 ILDIFNEALLYTSMGQHLDYAMAHRNKQDYSLFTTERYYSIVKYKTSF 548
++++F ++ T +GQ LD A + D FT +RY SIVKYKT+F
Sbjct: 149 LIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKTAF 196
>D14697-1|BAA03523.2| 420|Homo sapiens KIAA1293 protein.
Length = 420
Score = 152 bits (368), Expect = 2e-36
Identities = 75/168 (44%), Positives = 105/168 (62%), Gaps = 3/168 (1%)
Frame = +3
Query: 54 PELGSWV---KKVLEYNVKGGKKIRGITTVLAYELFEKPENVTEEMVRLARVAGWCTEML 224
PE+G + K+VLEYN GGK RG+T V+A+ +P + ++ A GWC E+L
Sbjct: 103 PEIGDAIARLKEVLEYNAIGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGWCVELL 162
Query: 225 QAYLIMNDDIMDGSSTRRGVPCWYRMPDVGLGAINDAILVYGSIYEILKIYFGKAKEYAD 404
QA+ ++ DDIMD S TRRG CWY+ P VGL AINDA L+ IY +LK+Y + Y +
Sbjct: 163 QAFFLVADDIMDSSLTRRGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQPYYLN 222
Query: 405 ILDIFNEALLYTSMGQHLDYAMAHRNKQDYSLFTTERYYSIVKYKTSF 548
++++F ++ T +GQ LD A + D FT +RY SIVKYKT+F
Sbjct: 223 LIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKTAF 270
>BC010004-1|AAH10004.1| 419|Homo sapiens farnesyl diphosphate
synthase (farnesyl pyrophosphate synthetase,
dimethylallyl protein.
Length = 419
Score = 152 bits (368), Expect = 2e-36
Identities = 75/168 (44%), Positives = 105/168 (62%), Gaps = 3/168 (1%)
Frame = +3
Query: 54 PELGSWV---KKVLEYNVKGGKKIRGITTVLAYELFEKPENVTEEMVRLARVAGWCTEML 224
PE+G + K+VLEYN GGK RG+T V+A+ +P + ++ A GWC E+L
Sbjct: 102 PEIGDAIARLKEVLEYNAIGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGWCVELL 161
Query: 225 QAYLIMNDDIMDGSSTRRGVPCWYRMPDVGLGAINDAILVYGSIYEILKIYFGKAKEYAD 404
QA+ ++ DDIMD S TRRG CWY+ P VGL AINDA L+ IY +LK+Y + Y +
Sbjct: 162 QAFFLVADDIMDSSLTRRGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQPYYLN 221
Query: 405 ILDIFNEALLYTSMGQHLDYAMAHRNKQDYSLFTTERYYSIVKYKTSF 548
++++F ++ T +GQ LD A + D FT +RY SIVKYKT+F
Sbjct: 222 LIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKTAF 269
>AL139410-1|CAI12715.1| 419|Homo sapiens farnesyl diphosphate
synthase (farnesyl pyrophosphate synthetase,
dimethylallyl protein.
Length = 419
Score = 152 bits (368), Expect = 2e-36
Identities = 75/168 (44%), Positives = 105/168 (62%), Gaps = 3/168 (1%)
Frame = +3
Query: 54 PELGSWV---KKVLEYNVKGGKKIRGITTVLAYELFEKPENVTEEMVRLARVAGWCTEML 224
PE+G + K+VLEYN GGK RG+T V+A+ +P + ++ A GWC E+L
Sbjct: 102 PEIGDAIARLKEVLEYNAIGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGWCVELL 161
Query: 225 QAYLIMNDDIMDGSSTRRGVPCWYRMPDVGLGAINDAILVYGSIYEILKIYFGKAKEYAD 404
QA+ ++ DDIMD S TRRG CWY+ P VGL AINDA L+ IY +LK+Y + Y +
Sbjct: 162 QAFFLVADDIMDSSLTRRGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQPYYLN 221
Query: 405 ILDIFNEALLYTSMGQHLDYAMAHRNKQDYSLFTTERYYSIVKYKTSF 548
++++F ++ T +GQ LD A + D FT +RY SIVKYKT+F
Sbjct: 222 LIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKTAF 269
>Z47055-1|CAA87327.1| 348|Homo sapiens farnesyl pyrophosphate
synthetase like-4 protein.
Length = 348
Score = 140 bits (338), Expect = 9e-33
Identities = 70/167 (41%), Positives = 100/167 (59%), Gaps = 3/167 (1%)
Frame = +3
Query: 54 PELGSWV---KKVLEYNVKGGKKIRGITTVLAYELFEKPENVTEEMVRLARVAGWCTEML 224
PE+G + K+VLEYN GGK R +T +A+ P + ++ A GWC E+L
Sbjct: 31 PEIGDAIARLKEVLEYNAIGGKYNRRLTVAVAFRELVDPRKQDADSLQRAWTVGWCVELL 90
Query: 225 QAYLIMNDDIMDGSSTRRGVPCWYRMPDVGLGAINDAILVYGSIYEILKIYFGKAKEYAD 404
QA+ ++ DDIMD S TRRG CWY+ P VGL AI+DA L+ IY +LK+Y + Y +
Sbjct: 91 QAFFLVADDIMDSSLTRRGQICWYQKPGVGLDAIDDANLLEACIYPLLKLYCREQPYYLN 150
Query: 405 ILDIFNEALLYTSMGQHLDYAMAHRNKQDYSLFTTERYYSIVKYKTS 545
++++F ++ T +GQ LD + D FT +RY SIVKYKT+
Sbjct: 151 LIELFLQSSYQTEIGQTLDLLTXPQGNVDLVRFTEKRYISIVKYKTA 197
>BC050292-1|AAH50292.1| 298|Homo sapiens LOC619190 protein protein.
Length = 298
Score = 123 bits (296), Expect = 1e-27
Identities = 60/159 (37%), Positives = 95/159 (59%)
Frame = +3
Query: 72 VKKVLEYNVKGGKKIRGITTVLAYELFEKPENVTEEMVRLARVAGWCTEMLQAYLIMNDD 251
+K+VLEYN GGK RG+ ++A+ +P + + ++ A GW ++LQA+ ++ DD
Sbjct: 13 LKEVLEYNAIGGKYHRGLMVLVAFRELVEPRKLDADSLQWAPTVGWYAQLLQAFFLVADD 72
Query: 252 IMDGSSTRRGVPCWYRMPDVGLGAINDAILVYGSIYEILKIYFGKAKEYADILDIFNEAL 431
IMD S T +G WY+ +GL AINDAIL+ IY +LK+Y + Y +++++F +
Sbjct: 73 IMDSSLTCQGQISWYQKLGMGLDAINDAILLEACIYCLLKLYCREQPYYLNLMELFQQNS 132
Query: 432 LYTSMGQHLDYAMAHRNKQDYSLFTTERYYSIVKYKTSF 548
T +GQ LD + D T +R+ S+VKYKT+F
Sbjct: 133 YQTEIGQTLDLITTPQGNVDLRRCTEKRHKSVVKYKTAF 171
>BC067768-1|AAH67768.1| 300|Homo sapiens GGPS1 protein protein.
Length = 300
Score = 39.5 bits (88), Expect = 0.018
Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 1/111 (0%)
Frame = +3
Query: 213 TEMLQAYLIMNDDIMDGSSTRRGVPCWYRMPDVGLGAINDAILVYG-SIYEILKIYFGKA 389
TEML ++ DDI D S RRG P + + + IN A VY + ++L +
Sbjct: 53 TEMLHNASLLIDDIEDNSKLRRGFPVAHSIYGIP-SVINSANYVYFLGLEKVLTL----- 106
Query: 390 KEYADILDIFNEALLYTSMGQHLDYAMAHRNKQDYSLFTTERYYSIVKYKT 542
++ D + +F LL GQ LD + +Y+ T E Y ++V KT
Sbjct: 107 -DHQDAVKLFTRQLLELHQGQGLDIYW----RDNYTCPTEEEYKAMVLQKT 152
>BC005252-1|AAH05252.1| 300|Homo sapiens geranylgeranyl diphosphate
synthase 1 protein.
Length = 300
Score = 39.5 bits (88), Expect = 0.018
Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 1/111 (0%)
Frame = +3
Query: 213 TEMLQAYLIMNDDIMDGSSTRRGVPCWYRMPDVGLGAINDAILVYG-SIYEILKIYFGKA 389
TEML ++ DDI D S RRG P + + + IN A VY + ++L +
Sbjct: 53 TEMLHNASLLIDDIEDNSKLRRGFPVAHSIYGIP-SVINSANYVYFLGLEKVLTL----- 106
Query: 390 KEYADILDIFNEALLYTSMGQHLDYAMAHRNKQDYSLFTTERYYSIVKYKT 542
++ D + +F LL GQ LD + +Y+ T E Y ++V KT
Sbjct: 107 -DHPDAVKLFTRQLLELHQGQGLDIYW----RDNYTCPTEEEYKAMVLQKT 152
>AL391994-8|CAI13753.1| 300|Homo sapiens geranylgeranyl diphosphate
synthase 1 protein.
Length = 300
Score = 39.5 bits (88), Expect = 0.018
Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 1/111 (0%)
Frame = +3
Query: 213 TEMLQAYLIMNDDIMDGSSTRRGVPCWYRMPDVGLGAINDAILVYG-SIYEILKIYFGKA 389
TEML ++ DDI D S RRG P + + + IN A VY + ++L +
Sbjct: 53 TEMLHNASLLIDDIEDNSKLRRGFPVAHSIYGIP-SVINSANYVYFLGLEKVLTL----- 106
Query: 390 KEYADILDIFNEALLYTSMGQHLDYAMAHRNKQDYSLFTTERYYSIVKYKT 542
++ D + +F LL GQ LD + +Y+ T E Y ++V KT
Sbjct: 107 -DHPDAVKLFTRQLLELHQGQGLDIYW----RDNYTCPTEEEYKAMVLQKT 152
>AF125394-1|AAD43050.1| 300|Homo sapiens gerannylgeranyl
pyrophosphate synthase protein.
Length = 300
Score = 39.5 bits (88), Expect = 0.018
Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 1/111 (0%)
Frame = +3
Query: 213 TEMLQAYLIMNDDIMDGSSTRRGVPCWYRMPDVGLGAINDAILVYG-SIYEILKIYFGKA 389
TEML ++ DDI D S RRG P + + + IN A VY + ++L +
Sbjct: 53 TEMLHNASLLIDDIEDNSKLRRGFPVAHSIYGIP-SVINSANYVYFLGLEKVLTL----- 106
Query: 390 KEYADILDIFNEALLYTSMGQHLDYAMAHRNKQDYSLFTTERYYSIVKYKT 542
++ D + +F LL GQ LD + +Y+ T E Y ++V KT
Sbjct: 107 -DHPDAVKLFTRQLLELHQGQGLDIYW----RDNYTCPTEEEYKAMVLQKT 152
>AF057698-1|AAG45581.1| 300|Homo sapiens geranylgeranyl
pyrophosphate synthetase protein.
Length = 300
Score = 39.5 bits (88), Expect = 0.018
Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 1/111 (0%)
Frame = +3
Query: 213 TEMLQAYLIMNDDIMDGSSTRRGVPCWYRMPDVGLGAINDAILVYG-SIYEILKIYFGKA 389
TEML ++ DDI D S RRG P + + + IN A VY + ++L +
Sbjct: 53 TEMLHNASLLIDDIEDNSKLRRGFPVAHSIYGIP-SVINSANYVYFLGLEKVLTL----- 106
Query: 390 KEYADILDIFNEALLYTSMGQHLDYAMAHRNKQDYSLFTTERYYSIVKYKT 542
++ D + +F LL GQ LD + +Y+ T E Y ++V KT
Sbjct: 107 -DHPDAVKLFTRQLLELHQGQGLDIYW----RDNYTCPTEEEYKAMVLQKT 152
>AB019036-1|BAA77251.1| 300|Homo sapiens geranylgeranyl
pyrophosphate synthase protein.
Length = 300
Score = 39.5 bits (88), Expect = 0.018
Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 1/111 (0%)
Frame = +3
Query: 213 TEMLQAYLIMNDDIMDGSSTRRGVPCWYRMPDVGLGAINDAILVYG-SIYEILKIYFGKA 389
TEML ++ DDI D S RRG P + + + IN A VY + ++L +
Sbjct: 53 TEMLHNASLLIDDIEDNSKLRRGFPVAHSIYGIP-SVINSANYVYFLGLEKVLTL----- 106
Query: 390 KEYADILDIFNEALLYTSMGQHLDYAMAHRNKQDYSLFTTERYYSIVKYKT 542
++ D + +F LL GQ LD + +Y+ T E Y ++V KT
Sbjct: 107 -DHPDAVKLFTRQLLELHQGQGLDIYW----RDNYTCPTEEEYKAMVLQKT 152
>AB017971-1|BAA75909.1| 300|Homo sapiens geranylgeranyl diphosphate
synthase protein.
Length = 300
Score = 39.5 bits (88), Expect = 0.018
Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 1/111 (0%)
Frame = +3
Query: 213 TEMLQAYLIMNDDIMDGSSTRRGVPCWYRMPDVGLGAINDAILVYG-SIYEILKIYFGKA 389
TEML ++ DDI D S RRG P + + + IN A VY + ++L +
Sbjct: 53 TEMLHNASLLIDDIEDNSKLRRGFPVAHSIYGIP-SVINSANYVYFLGLEKVLTL----- 106
Query: 390 KEYADILDIFNEALLYTSMGQHLDYAMAHRNKQDYSLFTTERYYSIVKYKT 542
++ D + +F LL GQ LD + +Y+ T E Y ++V KT
Sbjct: 107 -DHPDAVKLFTRQLLELHQGQGLDIYW----RDNYTCPTEEEYKAMVLQKT 152
>AB016043-1|BAA76511.1| 300|Homo sapiens GGPP synthase protein.
Length = 300
Score = 39.5 bits (88), Expect = 0.018
Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 1/111 (0%)
Frame = +3
Query: 213 TEMLQAYLIMNDDIMDGSSTRRGVPCWYRMPDVGLGAINDAILVYG-SIYEILKIYFGKA 389
TEML ++ DDI D S RRG P + + + IN A VY + ++L +
Sbjct: 53 TEMLHNASLLIDDIEDNSKLRRGFPVAHSIYGIP-SVINSANYVYFLGLEKVLTL----- 106
Query: 390 KEYADILDIFNEALLYTSMGQHLDYAMAHRNKQDYSLFTTERYYSIVKYKT 542
++ D + +F LL GQ LD + +Y+ T E Y ++V KT
Sbjct: 107 -DHPDAVKLFTRQLLELHQGQGLDIYW----RDNYTCPTEEEYKAMVLQKT 152
>BC063635-1|AAH63635.1| 306|Homo sapiens PDSS1 protein protein.
Length = 306
Score = 33.9 bits (74), Expect = 0.88
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = +3
Query: 66 SWVKKVLEYNVKG-GKKIRGITTVLAYELFEKPENVTEEMVRLARVAGWCTEMLQAYLIM 242
S +K++ EY G GK R I L N + + R EM+ ++
Sbjct: 119 SELKEMSEYYFDGKGKAFRPIIVALMARACNIHHNNSRHVQASQRAIALIAEMIHTASLV 178
Query: 243 NDDIMDGSSTRRG 281
+DD++D +S+RRG
Sbjct: 179 HDDVIDDASSRRG 191
>BC049211-1|AAH49211.1| 414|Homo sapiens PDSS1 protein protein.
Length = 414
Score = 33.9 bits (74), Expect = 0.88
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = +3
Query: 66 SWVKKVLEYNVKG-GKKIRGITTVLAYELFEKPENVTEEMVRLARVAGWCTEMLQAYLIM 242
S +K++ EY G GK R I L N + + R EM+ ++
Sbjct: 118 SELKEMSEYYFDGKGKAFRPIIVALMARACNIHHNNSRHVQASQRAIALIAEMIHTASLV 177
Query: 243 NDDIMDGSSTRRG 281
+DD++D +S+RRG
Sbjct: 178 HDDVIDDASSRRG 190
>AL390961-9|CAI17280.1| 415|Homo sapiens trans-prenyltransferase
(TPT) protein.
Length = 415
Score = 33.9 bits (74), Expect = 0.88
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = +3
Query: 66 SWVKKVLEYNVKG-GKKIRGITTVLAYELFEKPENVTEEMVRLARVAGWCTEMLQAYLIM 242
S +K++ EY G GK R I L N + + R EM+ ++
Sbjct: 119 SELKEMSEYYFDGKGKAFRPIIVALMARACNIHHNNSRHVQASQRAIALIAEMIHTASLV 178
Query: 243 NDDIMDGSSTRRG 281
+DD++D +S+RRG
Sbjct: 179 HDDVIDDASSRRG 191
>AF118395-1|AAD28559.1| 376|Homo sapiens trans-prenyltransferase
protein.
Length = 376
Score = 33.9 bits (74), Expect = 0.88
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Frame = +3
Query: 72 VKKVLEY--NVKGGKKIRGITTVLAYELFEKPENVTEEMVRLARVAGWCTEMLQAYLIMN 245
+K++ EY +VKG K R I VL N + + R EM+ +++
Sbjct: 82 LKEISEYYFDVKG-KAFRPIIVVLMARACNIHHNNSRHVQASQRAIALIAEMIHTASLVH 140
Query: 246 DDIMDGSSTRRG 281
DD++D +S+RRG
Sbjct: 141 DDVIDDASSRRG 152
>AB210838-1|BAE48216.1| 415|Homo sapiens subunit 1 of decaprenyl
diphosphate synthase protein.
Length = 415
Score = 33.9 bits (74), Expect = 0.88
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = +3
Query: 66 SWVKKVLEYNVKG-GKKIRGITTVLAYELFEKPENVTEEMVRLARVAGWCTEMLQAYLIM 242
S +K++ EY G GK R I L N + + R EM+ ++
Sbjct: 119 SELKEMSEYYFDGKGKAFRPIIVALMARACNIHHNNSRHVQASQRAIALIAEMIHTASLV 178
Query: 243 NDDIMDGSSTRRG 281
+DD++D +S+RRG
Sbjct: 179 HDDVIDDASSRRG 191
>AB209763-1|BAD93000.1| 297|Homo sapiens trans-prenyltransferase
variant protein.
Length = 297
Score = 33.9 bits (74), Expect = 0.88
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = +3
Query: 66 SWVKKVLEYNVKG-GKKIRGITTVLAYELFEKPENVTEEMVRLARVAGWCTEMLQAYLIM 242
S +K++ EY G GK R I L N + + R EM+ ++
Sbjct: 126 SELKEMSEYYFDGKGKAFRPIIVALMARACNIHHNNSRHVQASQRAIALIAEMIHTASLV 185
Query: 243 NDDIMDGSSTRRG 281
+DD++D +S+RRG
Sbjct: 186 HDDVIDDASSRRG 198
>AK223414-1|BAD97134.1| 415|Homo sapiens trans-prenyltransferase
variant protein.
Length = 415
Score = 32.7 bits (71), Expect = 2.0
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = +3
Query: 66 SWVKKVLEYNVKG-GKKIRGITTVLAYELFEKPENVTEEMVRLARVAGWCTEMLQAYLIM 242
S +K++ EY G GK R I L N + + R EM+ ++
Sbjct: 119 SELKEMSEYYFDGKGKAFRPIIVALMARACNIHHNNSRHVQASQRAIALIAEMIHTASLV 178
Query: 243 NDDIMDGSSTRRG 281
+DD++D S+RRG
Sbjct: 179 HDDVIDDVSSRRG 191
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,348,597
Number of Sequences: 237096
Number of extensions: 1763000
Number of successful extensions: 7216
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 7138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7216
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12658656216
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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