Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_N04
         (958 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81106-1|CAB03221.2|  352|Caenorhabditis elegans Hypothetical pr...    80   3e-15
AF067608-13|AAK95862.1| 1634|Caenorhabditis elegans Hypothetical...    29   4.9  

>Z81106-1|CAB03221.2|  352|Caenorhabditis elegans Hypothetical
           protein R06C1.2 protein.
          Length = 352

 Score = 79.8 bits (188), Expect = 3e-15
 Identities = 50/160 (31%), Positives = 86/160 (53%), Gaps = 3/160 (1%)
 Frame = +3

Query: 75  KKVLEYNVKGGKKIRG---ITTVLAYELFEKPENVTEEMVRLARVAGWCTEMLQAYLIMN 245
           + + +  V GGK  R    + T+ A +   + E  T+E+  +   A    E++Q++ ++ 
Sbjct: 42  RNLFDNTVIGGKYSRASLCVDTIRALQPHLRDE--TQELQAVCEAAA-TLEIIQSFYLIA 98

Query: 246 DDIMDGSSTRRGVPCWYRMPDVGLGAINDAILVYGSIYEILKIYFGKAKEYADILDIFNE 425
           DDIMD S TRRG PCW+R   VG+ AINDA ++   + +IL++          + + + +
Sbjct: 99  DDIMDNSETRRGKPCWFRREGVGMSAINDAFIMDSFVEDILRLALPGHVNLDRLCEAYRK 158

Query: 426 ALLYTSMGQHLDYAMAHRNKQDYSLFTTERYYSIVKYKTS 545
           +   T +GQ LD +  ++     S FT +RY  +V+ KTS
Sbjct: 159 SKQKTLIGQFLDTSSVNQ----ISSFTWDRYELMVENKTS 194


>AF067608-13|AAK95862.1| 1634|Caenorhabditis elegans Hypothetical
           protein B0511.12 protein.
          Length = 1634

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
 Frame = -1

Query: 208 QPATRANLTISSVTFSGFSNNS*ASTVVMPLI----FLPPLTLYSKTFLTQLPSS 56
           QP+T A    SSVT    ++NS   TV +PL      L   +  S T++  LPSS
Sbjct: 21  QPSTSAAAAASSVTVLPSTSNSQTQTVQLPLTRRERALSSSSNESSTYMPTLPSS 75


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,306,432
Number of Sequences: 27780
Number of extensions: 287490
Number of successful extensions: 752
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2486134266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)