Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP19_F_N03
(884 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BX572623-1|CAM12862.1| 664|Homo sapiens novel protein protein. 35 0.45
BC032427-1|AAH32427.1| 664|Homo sapiens transmembrane protein 5... 35 0.45
AY845036-1|AAX11934.1| 306|Homo sapiens macoilin isoform 2 prot... 35 0.45
AY845035-1|AAX11933.1| 437|Homo sapiens macoilin isoform 1 prot... 35 0.45
AY845015-1|AAX11913.1| 664|Homo sapiens macoilin protein. 35 0.45
AL031284-6|CAM12861.1| 664|Homo sapiens novel protein protein. 35 0.45
AK001609-1|BAA91786.1| 664|Homo sapiens protein ( Homo sapiens ... 35 0.45
X67337-1|CAA47752.1| 551|Homo sapiens Human pre-mRNA cleavage f... 33 1.0
X67336-1|CAA47751.1| 551|Homo sapiens HPBRII-7 protein. 33 1.0
BC005000-1|AAH05000.1| 478|Homo sapiens CPSF6 protein protein. 33 1.0
BC000714-1|AAH00714.1| 588|Homo sapiens CPSF6 protein protein. 33 1.0
AK223568-1|BAD97288.1| 551|Homo sapiens cleavage and polyadenyl... 33 1.0
AL646016-1|CAI17009.1| 1865|Homo sapiens formin 2 protein. 33 1.8
AL590490-1|CAH70931.1| 1865|Homo sapiens formin 2 protein. 33 1.8
AL513342-1|CAI17121.1| 1865|Homo sapiens formin 2 protein. 33 1.8
AL359918-1|CAI15795.1| 1865|Homo sapiens formin 2 protein. 33 1.8
>BX572623-1|CAM12862.1| 664|Homo sapiens novel protein protein.
Length = 664
Score = 34.7 bits (76), Expect = 0.45
Identities = 14/21 (66%), Positives = 18/21 (85%)
Frame = +2
Query: 194 MKRRNAEPGKIRRPMKRTKIT 256
MKRRNA+ K+RRP+KR +IT
Sbjct: 1 MKRRNADCSKLRRPLKRNRIT 21
>BC032427-1|AAH32427.1| 664|Homo sapiens transmembrane protein 57
protein.
Length = 664
Score = 34.7 bits (76), Expect = 0.45
Identities = 14/21 (66%), Positives = 18/21 (85%)
Frame = +2
Query: 194 MKRRNAEPGKIRRPMKRTKIT 256
MKRRNA+ K+RRP+KR +IT
Sbjct: 1 MKRRNADCSKLRRPLKRNRIT 21
>AY845036-1|AAX11934.1| 306|Homo sapiens macoilin isoform 2
protein.
Length = 306
Score = 34.7 bits (76), Expect = 0.45
Identities = 14/21 (66%), Positives = 18/21 (85%)
Frame = +2
Query: 194 MKRRNAEPGKIRRPMKRTKIT 256
MKRRNA+ K+RRP+KR +IT
Sbjct: 1 MKRRNADCSKLRRPLKRNRIT 21
>AY845035-1|AAX11933.1| 437|Homo sapiens macoilin isoform 1
protein.
Length = 437
Score = 34.7 bits (76), Expect = 0.45
Identities = 14/21 (66%), Positives = 18/21 (85%)
Frame = +2
Query: 194 MKRRNAEPGKIRRPMKRTKIT 256
MKRRNA+ K+RRP+KR +IT
Sbjct: 1 MKRRNADCSKLRRPLKRNRIT 21
>AY845015-1|AAX11913.1| 664|Homo sapiens macoilin protein.
Length = 664
Score = 34.7 bits (76), Expect = 0.45
Identities = 14/21 (66%), Positives = 18/21 (85%)
Frame = +2
Query: 194 MKRRNAEPGKIRRPMKRTKIT 256
MKRRNA+ K+RRP+KR +IT
Sbjct: 1 MKRRNADCSKLRRPLKRNRIT 21
>AL031284-6|CAM12861.1| 664|Homo sapiens novel protein protein.
Length = 664
Score = 34.7 bits (76), Expect = 0.45
Identities = 14/21 (66%), Positives = 18/21 (85%)
Frame = +2
Query: 194 MKRRNAEPGKIRRPMKRTKIT 256
MKRRNA+ K+RRP+KR +IT
Sbjct: 1 MKRRNADCSKLRRPLKRNRIT 21
>AK001609-1|BAA91786.1| 664|Homo sapiens protein ( Homo sapiens
cDNA FLJ10747 fis, clone NT2RP3001799. ).
Length = 664
Score = 34.7 bits (76), Expect = 0.45
Identities = 14/21 (66%), Positives = 18/21 (85%)
Frame = +2
Query: 194 MKRRNAEPGKIRRPMKRTKIT 256
MKRRNA+ K+RRP+KR +IT
Sbjct: 1 MKRRNADCSKLRRPLKRNRIT 21
>X67337-1|CAA47752.1| 551|Homo sapiens Human pre-mRNA cleavage
factor I 68 kDa subunit protein.
Length = 551
Score = 33.5 bits (73), Expect = 1.0
Identities = 21/74 (28%), Positives = 24/74 (32%)
Frame = +3
Query: 486 PGXNXFXGXXPXXXGPXPVXTXXPXKGCXFPPXPXFPPLXXXGGXPXPXXXXGXPXPXXX 665
PG G P GP P P + PP P PPL P G P P
Sbjct: 301 PGYGPPPGPPPPQQGPPPPPGPFPPR----PPGPLGPPLTLAPPPHLPGPPPGAPPPAPH 356
Query: 666 XXXXWXXPPXTXGL 707
+ PP G+
Sbjct: 357 VNPAFFPPPTNSGM 370
>X67336-1|CAA47751.1| 551|Homo sapiens HPBRII-7 protein.
Length = 551
Score = 33.5 bits (73), Expect = 1.0
Identities = 21/74 (28%), Positives = 24/74 (32%)
Frame = +3
Query: 486 PGXNXFXGXXPXXXGPXPVXTXXPXKGCXFPPXPXFPPLXXXGGXPXPXXXXGXPXPXXX 665
PG G P GP P P + PP P PPL P G P P
Sbjct: 301 PGYGPPPGPPPPQQGPPPPPGPFPPR----PPGPLGPPLTLAPPPHLPGPPPGAPPPAPH 356
Query: 666 XXXXWXXPPXTXGL 707
+ PP G+
Sbjct: 357 VNPAFFPPPTNSGM 370
>BC005000-1|AAH05000.1| 478|Homo sapiens CPSF6 protein protein.
Length = 478
Score = 33.5 bits (73), Expect = 1.0
Identities = 21/74 (28%), Positives = 24/74 (32%)
Frame = +3
Query: 486 PGXNXFXGXXPXXXGPXPVXTXXPXKGCXFPPXPXFPPLXXXGGXPXPXXXXGXPXPXXX 665
PG G P GP P P + PP P PPL P G P P
Sbjct: 228 PGYGPPPGPPPPQQGPPPPPGPFPPR----PPGPLGPPLTLAPPPHLPGPPPGAPPPAPH 283
Query: 666 XXXXWXXPPXTXGL 707
+ PP G+
Sbjct: 284 VNPAFFPPPTNSGM 297
>BC000714-1|AAH00714.1| 588|Homo sapiens CPSF6 protein protein.
Length = 588
Score = 33.5 bits (73), Expect = 1.0
Identities = 21/74 (28%), Positives = 24/74 (32%)
Frame = +3
Query: 486 PGXNXFXGXXPXXXGPXPVXTXXPXKGCXFPPXPXFPPLXXXGGXPXPXXXXGXPXPXXX 665
PG G P GP P P + PP P PPL P G P P
Sbjct: 338 PGYGPPPGPPPPQQGPPPPPGPFPPR----PPGPLGPPLTLAPPPHLPGPPPGAPPPAPH 393
Query: 666 XXXXWXXPPXTXGL 707
+ PP G+
Sbjct: 394 VNPAFFPPPTNSGM 407
>AK223568-1|BAD97288.1| 551|Homo sapiens cleavage and
polyadenylation specific factor 6, 68 kD subunit variant
protein.
Length = 551
Score = 33.5 bits (73), Expect = 1.0
Identities = 21/74 (28%), Positives = 24/74 (32%)
Frame = +3
Query: 486 PGXNXFXGXXPXXXGPXPVXTXXPXKGCXFPPXPXFPPLXXXGGXPXPXXXXGXPXPXXX 665
PG G P GP P P + PP P PPL P G P P
Sbjct: 301 PGYGPPPGPPPPQQGPPPPPGPFPPR----PPGPLGPPLTLAPPPHLPGPPPGAPPPAPH 356
Query: 666 XXXXWXXPPXTXGL 707
+ PP G+
Sbjct: 357 VNPAFFPPPTNSGM 370
>AL646016-1|CAI17009.1| 1865|Homo sapiens formin 2 protein.
Length = 1865
Score = 32.7 bits (71), Expect = 1.8
Identities = 23/79 (29%), Positives = 25/79 (31%), Gaps = 2/79 (2%)
Frame = +2
Query: 578 PXAXFPPPXXLXGX--PXPXGXPGXXXPXXXXXXXLXXPXXHPGXGGXGLXXPXXCXXXX 751
P A PPP L G P P PG P + P P G G+ P
Sbjct: 1301 PGAGIPPPPPLPGAGIPPPPPLPGVGIPPPPPLPGVGIPPP-PPLPGAGIPPPPPLPGMG 1359
Query: 752 XPXAPXXXYSXERTXXXPP 808
P AP T PP
Sbjct: 1360 IPPAPAPPLPPPGTGIPPP 1378
>AL590490-1|CAH70931.1| 1865|Homo sapiens formin 2 protein.
Length = 1865
Score = 32.7 bits (71), Expect = 1.8
Identities = 23/79 (29%), Positives = 25/79 (31%), Gaps = 2/79 (2%)
Frame = +2
Query: 578 PXAXFPPPXXLXGX--PXPXGXPGXXXPXXXXXXXLXXPXXHPGXGGXGLXXPXXCXXXX 751
P A PPP L G P P PG P + P P G G+ P
Sbjct: 1301 PGAGIPPPPPLPGAGIPPPPPLPGVGIPPPPPLPGVGIPPP-PPLPGAGIPPPPPLPGMG 1359
Query: 752 XPXAPXXXYSXERTXXXPP 808
P AP T PP
Sbjct: 1360 IPPAPAPPLPPPGTGIPPP 1378
>AL513342-1|CAI17121.1| 1865|Homo sapiens formin 2 protein.
Length = 1865
Score = 32.7 bits (71), Expect = 1.8
Identities = 23/79 (29%), Positives = 25/79 (31%), Gaps = 2/79 (2%)
Frame = +2
Query: 578 PXAXFPPPXXLXGX--PXPXGXPGXXXPXXXXXXXLXXPXXHPGXGGXGLXXPXXCXXXX 751
P A PPP L G P P PG P + P P G G+ P
Sbjct: 1301 PGAGIPPPPPLPGAGIPPPPPLPGVGIPPPPPLPGVGIPPP-PPLPGAGIPPPPPLPGMG 1359
Query: 752 XPXAPXXXYSXERTXXXPP 808
P AP T PP
Sbjct: 1360 IPPAPAPPLPPPGTGIPPP 1378
>AL359918-1|CAI15795.1| 1865|Homo sapiens formin 2 protein.
Length = 1865
Score = 32.7 bits (71), Expect = 1.8
Identities = 23/79 (29%), Positives = 25/79 (31%), Gaps = 2/79 (2%)
Frame = +2
Query: 578 PXAXFPPPXXLXGX--PXPXGXPGXXXPXXXXXXXLXXPXXHPGXGGXGLXXPXXCXXXX 751
P A PPP L G P P PG P + P P G G+ P
Sbjct: 1301 PGAGIPPPPPLPGAGIPPPPPLPGVGIPPPPPLPGVGIPPP-PPLPGAGIPPPPPLPGMG 1359
Query: 752 XPXAPXXXYSXERTXXXPP 808
P AP T PP
Sbjct: 1360 IPPAPAPPLPPPGTGIPPP 1378
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,620,473
Number of Sequences: 237096
Number of extensions: 1806615
Number of successful extensions: 7475
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 6101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7215
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11326166088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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