Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_N03
         (884 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    31   0.83 
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    31   0.83 
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    31   0.83 
U23172-13|ABH03527.1|  282|Caenorhabditis elegans Hypothetical p...    29   5.8  
U23172-12|ABH03526.1|  562|Caenorhabditis elegans Hypothetical p...    29   5.8  

>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 31.5 bits (68), Expect = 0.83
 Identities = 31/101 (30%), Positives = 32/101 (31%), Gaps = 2/101 (1%)
 Frame = +3

Query: 333 TCWNLXSXSPGPSGLCRXXXIT--PXSTPGLAFSKXXPICXPXPXXXYFFXFXPGXNXFX 506
           T  NL + S    G      IT  P   PGL      P   P P         P      
Sbjct: 689 TKMNLSAPSTSAGGSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPP 748

Query: 507 GXXPXXXGPXPVXTXXPXKGCXFPPXPXFPPLXXXGGXPXP 629
           G  P   G  P     P  GC  PP P  PP    GG P P
Sbjct: 749 GGLPPISGGPPPPPPPPG-GCP-PPPPPPPPGGFKGGPPPP 787


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 31.5 bits (68), Expect = 0.83
 Identities = 31/101 (30%), Positives = 32/101 (31%), Gaps = 2/101 (1%)
 Frame = +3

Query: 333 TCWNLXSXSPGPSGLCRXXXIT--PXSTPGLAFSKXXPICXPXPXXXYFFXFXPGXNXFX 506
           T  NL + S    G      IT  P   PGL      P   P P         P      
Sbjct: 689 TKMNLSAPSTSAGGSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPP 748

Query: 507 GXXPXXXGPXPVXTXXPXKGCXFPPXPXFPPLXXXGGXPXP 629
           G  P   G  P     P  GC  PP P  PP    GG P P
Sbjct: 749 GGLPPISGGPPPPPPPPG-GCP-PPPPPPPPGGFKGGPPPP 787


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 31.5 bits (68), Expect = 0.83
 Identities = 31/101 (30%), Positives = 32/101 (31%), Gaps = 2/101 (1%)
 Frame = +3

Query: 333 TCWNLXSXSPGPSGLCRXXXIT--PXSTPGLAFSKXXPICXPXPXXXYFFXFXPGXNXFX 506
           T  NL + S    G      IT  P   PGL      P   P P         P      
Sbjct: 272 TKMNLSAPSTSAGGSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPP 331

Query: 507 GXXPXXXGPXPVXTXXPXKGCXFPPXPXFPPLXXXGGXPXP 629
           G  P   G  P     P  GC  PP P  PP    GG P P
Sbjct: 332 GGLPPISGGPPPPPPPPG-GCP-PPPPPPPPGGFKGGPPPP 370


>U23172-13|ABH03527.1|  282|Caenorhabditis elegans Hypothetical
           protein F25B5.7c protein.
          Length = 282

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 20/61 (32%), Positives = 22/61 (36%), Gaps = 1/61 (1%)
 Frame = -2

Query: 709 PXPXVXGGXXQXXXXXXXGXGXPXXXXGXGXPP-KXXRGGKXGXGGXQXPFXGXXVXTGX 533
           P P + GG          G G P    G G PP    +GG  G GG   P  G     G 
Sbjct: 154 PPPLMGGGGDPRGPPG--GMGGPPGHGGMGGPPGHGGQGGPPGHGGMGGPPPGQGGPGGP 211

Query: 532 G 530
           G
Sbjct: 212 G 212


>U23172-12|ABH03526.1|  562|Caenorhabditis elegans Hypothetical
           protein F25B5.7a protein.
          Length = 562

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 20/61 (32%), Positives = 22/61 (36%), Gaps = 1/61 (1%)
 Frame = -2

Query: 709 PXPXVXGGXXQXXXXXXXGXGXPXXXXGXGXPP-KXXRGGKXGXGGXQXPFXGXXVXTGX 533
           P P + GG          G G P    G G PP    +GG  G GG   P  G     G 
Sbjct: 434 PPPLMGGGGDPRGPPG--GMGGPPGHGGMGGPPGHGGQGGPPGHGGMGGPPPGQGGPGGP 491

Query: 532 G 530
           G
Sbjct: 492 G 492


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,507,091
Number of Sequences: 27780
Number of extensions: 247882
Number of successful extensions: 524
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 499
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)