Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP19_F_N02
(923 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38; Eukaryo... 369 e-101
UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform; n=... 359 7e-98
UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein... 215 4e-90
UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55; Eukar... 318 1e-85
UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2; E... 283 6e-75
UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S riboso... 166 3e-71
UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S riboso... 269 8e-71
UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillard... 253 4e-66
UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n... 247 3e-64
UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9; Eukaryot... 230 3e-59
UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing ... 224 2e-57
UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1; Encephal... 170 4e-41
UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1; Methano... 132 1e-29
UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12; Euryar... 130 6e-29
UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4; Desulfu... 128 2e-28
UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2; Methanobact... 127 5e-28
UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1; Th... 121 2e-26
UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4; Pyrobac... 116 6e-25
UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga ... 112 1e-23
UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2; Bigelowi... 111 2e-23
UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3; Thermop... 110 4e-23
UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4; Euryarc... 110 6e-23
UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2; Euryarc... 108 2e-22
UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1; Methanococc... 105 1e-21
UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmenta... 105 2e-21
UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3; Me... 105 2e-21
UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1; Nanoarc... 104 4e-21
UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_030011... 101 3e-20
UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5; Sulfolo... 98 3e-19
UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1; Picroph... 90 8e-17
UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6; Halobac... 86 1e-15
UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1; Me... 85 3e-15
UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2; Thermoprote... 84 4e-15
UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n... 48 3e-04
UniRef50_A0BHK0 Cluster: Chromosome undetermined scaffold_108, w... 40 0.068
UniRef50_UPI000038E364 Cluster: hypothetical protein Faci_030005... 38 0.48
UniRef50_Q7U147 Cluster: PROBABLE OXIDASE; n=7; Mycobacterium tu... 35 2.6
UniRef50_A5BNN8 Cluster: Putative uncharacterized protein; n=1; ... 35 3.4
UniRef50_A6GEF6 Cluster: Hydrolase, alpha/beta fold family prote... 34 5.9
UniRef50_A6E8K7 Cluster: Putative uncharacterized protein; n=1; ... 33 7.8
>UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38;
Eukaryota|Rep: 40S ribosomal protein S4 - Drosophila
melanogaster (Fruit fly)
Length = 261
Score = 369 bits (909), Expect = e-101
Identities = 169/214 (78%), Positives = 189/214 (88%)
Frame = +1
Query: 73 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 252
MARGPKKHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G E
Sbjct: 1 MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAE 60
Query: 253 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 432
V KIV QRL+KVDGKVRTDPTYPAG+MDV+++EKT E FRL+YDVKGRF IHRI+ EEAK
Sbjct: 61 VTKIVMQRLVKVDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAK 120
Query: 433 YKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNL 612
YKLCKVK+ G K VP+LVTHDGRTIRYPDPLI NDS+Q+DIA+ KI D+IKF+SGNL
Sbjct: 121 YKLCKVKKTQLGAKGVPFLVTHDGRTIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNL 180
Query: 613 CMITGGRNLGRVGTIVSRERHPGSSXXVXIHNXE 714
CMITGGRNLGRVGT+V+RERHPGS V I + +
Sbjct: 181 CMITGGRNLGRVGTVVNRERHPGSFDIVHIKDSQ 214
>UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform;
n=137; Eukaryota|Rep: 40S ribosomal protein S4, X
isoform - Homo sapiens (Human)
Length = 263
Score = 359 bits (882), Expect = 7e-98
Identities = 161/210 (76%), Positives = 183/210 (87%)
Frame = +1
Query: 73 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 252
MARGPKKHLKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+E
Sbjct: 1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDE 60
Query: 253 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 432
V KI QR IK+DGKVRTD TYPAGFMDV+SI+KT E FRLIYD KGRF +HRITPEEAK
Sbjct: 61 VKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAK 120
Query: 433 YKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNL 612
YKLCKV+++ G K +P+LVTHD RTIRYPDPLIKVND+IQ+D+ T KI DFIKF++GNL
Sbjct: 121 YKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNL 180
Query: 613 CMITGGRNLGRVGTIVSRERHPGSSXXVXI 702
CM+TGG NLGR+G I +RERHPGS V +
Sbjct: 181 CMVTGGANLGRIGVITNRERHPGSFDVVHV 210
>UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein
S4, X isoform (LOC126235), mRNA; n=1; Takifugu
rubripes|Rep: similar to 40S ribosomal protein S4, X
isoform (LOC126235), mRNA - Takifugu rubripes
Length = 291
Score = 215 bits (525), Expect(2) = 4e-90
Identities = 99/119 (83%), Positives = 107/119 (89%)
Frame = +1
Query: 76 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEV 255
ARGPKKHLKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+EV
Sbjct: 2 ARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEV 61
Query: 256 LKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 432
KI QR IK+DGKVRTD TYP GFMDV+SI+KT E FRLIYDVKGRFT+HRIT EEAK
Sbjct: 62 KKICMQRFIKIDGKVRTDITYPTGFMDVISIDKTGEHFRLIYDVKGRFTVHRITAEEAK 120
Score = 140 bits (339), Expect(2) = 4e-90
Identities = 58/91 (63%), Positives = 75/91 (82%)
Frame = +1
Query: 430 KYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGN 609
+YKLCKVK++ G K +P+LVTHD RTIRYPDPLIKVND++++D+ T KI DFIKF++ N
Sbjct: 152 QYKLCKVKKILIGTKGIPHLVTHDARTIRYPDPLIKVNDTVRIDLDTGKITDFIKFDTSN 211
Query: 610 LCMITGGRNLGRVGTIVSRERHPGSSXXVXI 702
+CM+TGG NLGR+G I +RERHPGS V +
Sbjct: 212 MCMVTGGANLGRIGVITNRERHPGSFDVVHV 242
>UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55;
Eukaryota|Rep: 40S ribosomal protein S4-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 262
Score = 318 bits (781), Expect = 1e-85
Identities = 146/212 (68%), Positives = 173/212 (81%)
Frame = +1
Query: 73 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 252
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT E
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60
Query: 253 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 432
V+ I+ QR I+VDGKVRTD TYPAGFMDVVSI KTNE FRL+YD KGRF +H I EEAK
Sbjct: 61 VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAK 120
Query: 433 YKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNL 612
+KLCKV+ + G K +PYL T+DGRTIRYPDPLIK ND+I+LD+ KI++FIKF+ GN+
Sbjct: 121 FKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNV 180
Query: 613 CMITGGRNLGRVGTIVSRERHPGSSXXVXIHN 708
M+TGGRN GRVG I +RE+H GS + I +
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQD 212
>UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2;
Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal
protein S4 - Entamoeba histolytica HM-1:IMSS
Length = 326
Score = 283 bits (693), Expect = 6e-75
Identities = 126/210 (60%), Positives = 159/210 (75%)
Frame = +1
Query: 73 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 252
MARGP+ HLKRLNAP WML KLGG +AP+PS GPH ++ECLPL++ LRNRL YAL G E
Sbjct: 1 MARGPRHHLKRLNAPHHWMLSKLGGTFAPKPSHGPHGMKECLPLILILRNRLNYALNGRE 60
Query: 253 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 432
V IVK R IK+DGK+RTD YP GFMDV+SI +T E FRL+Y+ K RF + +T E+AK
Sbjct: 61 VTMIVKNRTIKIDGKIRTDTRYPVGFMDVLSIPRTKENFRLMYNTKRRFCLVPLTAEQAK 120
Query: 433 YKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNL 612
+KLCK+++ G +PY+VTHDGRTIRYP P ++ ND+I+L++ T KI+DF+KF+ GN
Sbjct: 121 FKLCKIEKRVLGTGAIPYIVTHDGRTIRYPHPELQANDTIKLNLETGKIVDFVKFDIGNT 180
Query: 613 CMITGGRNLGRVGTIVSRERHPGSSXXVXI 702
M+ GG +GRVG IV RE HPGS V I
Sbjct: 181 AMMIGGNGMGRVGVIVKREVHPGSFEIVHI 210
>UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=3; Eutheria|Rep: PREDICTED:
similar to 40S ribosomal protein S4, X isoform - Canis
familiaris
Length = 240
Score = 166 bits (404), Expect(2) = 3e-71
Identities = 71/107 (66%), Positives = 87/107 (81%)
Frame = +1
Query: 382 DVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLD 561
D KGRF +HRITPEEAKYKL KV+++ G K +P+LVTHD RTIRYPDPLIK+ND+IQ+D
Sbjct: 76 DTKGRFAVHRITPEEAKYKLGKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKMNDTIQID 135
Query: 562 IATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSSXXVXI 702
+ T KI DF KF++GNLCM+TGG NLGR+G I +RE HPGS V +
Sbjct: 136 LETGKITDFFKFDTGNLCMVTGGTNLGRIGVITNRENHPGSFDVVHV 182
Score = 126 bits (303), Expect(2) = 3e-71
Identities = 57/75 (76%), Positives = 63/75 (84%)
Frame = +1
Query: 73 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 252
MA P+KHLK + APK WMLDKL GV+AP PSTGPHKLRECLPL+IFLRNRLKYALTG+E
Sbjct: 1 MAHSPRKHLKHVAAPKHWMLDKLTGVFAPHPSTGPHKLRECLPLIIFLRNRLKYALTGDE 60
Query: 253 VLKIVKQRLIKVDGK 297
V KI Q IK+DGK
Sbjct: 61 VKKIRMQHFIKMDGK 75
>UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=1; Macaca mulatta|Rep:
PREDICTED: similar to 40S ribosomal protein S4, X
isoform - Macaca mulatta
Length = 244
Score = 269 bits (659), Expect = 8e-71
Identities = 128/207 (61%), Positives = 159/207 (76%)
Frame = +1
Query: 64 LSNMARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALT 243
++ +A GPK+HLKR+ A + WMLDKL GV+A RPSTGPHKLRECLP IFLRNRLKYALT
Sbjct: 9 ITAVAFGPKQHLKRVAALQHWMLDKLTGVFAARPSTGPHKLRECLPH-IFLRNRLKYALT 67
Query: 244 GNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPE 423
G+EV KI Q IKVDGK+RTD P MDV+SI+K E F LIY + RF +HRITPE
Sbjct: 68 GDEVKKICMQWFIKVDGKIRTDNNLPYWIMDVISIDKMGEDFCLIYGINRRFALHRITPE 127
Query: 424 EAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFES 603
E KYKLCK++++ K +P+LV HD T+R+PD LIKVND+IQ+D+ T KI +KF++
Sbjct: 128 EVKYKLCKMRKIFVRAKGIPHLVIHDIHTVRHPDSLIKVNDTIQIDLETGKI-TALKFDT 186
Query: 604 GNLCMITGGRNLGRVGTIVSRERHPGS 684
GNLC++TGG N GR+G I +RERHP S
Sbjct: 187 GNLCLVTGGGNWGRIGVITNRERHPVS 213
>UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillardia
theta|Rep: 40S ribosomal protein S4 - Guillardia theta
(Cryptomonas phi)
Length = 257
Score = 253 bits (620), Expect = 4e-66
Identities = 115/210 (54%), Positives = 154/210 (73%)
Frame = +1
Query: 73 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 252
M+RG KKH KRLNAPK W+L+KLGG++APR S+GPHK + +PLVI +RN+LKY+ E
Sbjct: 1 MSRGIKKHYKRLNAPKKWLLNKLGGIWAPRSSSGPHKKQNSIPLVIVIRNKLKYSTNQRE 60
Query: 253 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 432
L I+K+ I VDGKVR D +PAG MDV+SI+ T E +R++YD G F +HRIT +E+
Sbjct: 61 SLNILKKNEIYVDGKVRADKNFPAGVMDVISIKTTKENYRVLYDNVGHFFLHRITIKESM 120
Query: 433 YKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNL 612
+KLCKV RV+ G K +PY+VTHDGRTIR+P+ LIK NDSI LD+ K++DFIKF G+L
Sbjct: 121 FKLCKVIRVSIGSKGIPYIVTHDGRTIRFPNLLIKSNDSIVLDLLNNKVIDFIKFSIGSL 180
Query: 613 CMITGGRNLGRVGTIVSRERHPGSSXXVXI 702
C++ G N+GR+G ++ GS V +
Sbjct: 181 CVVIKGSNIGRIGVFINTIGGQGSDSIVCL 210
>UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n=4;
Trichomonas vaginalis G3|Rep: 40S ribosomal protein
S4-C, putative - Trichomonas vaginalis G3
Length = 269
Score = 247 bits (605), Expect = 3e-64
Identities = 116/220 (52%), Positives = 157/220 (71%)
Frame = +1
Query: 43 FAFSI*YLSNMARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRN 222
F++S+ +L M R + HLKRL AP W+L K G +A PSTGPHKLRECLP+ IFLR+
Sbjct: 7 FSWSVLFL--MPRCQRFHLKRLTAPHHWLLAKSAGKFASHPSTGPHKLRECLPINIFLRD 64
Query: 223 RLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFT 402
RLKYALT E + IVK+RL+KVDGKVRT+ YP G MDV+ + K+NELFR+IYD KGRF
Sbjct: 65 RLKYALTAKEAVAIVKRRLVKVDGKVRTNYRYPTGLMDVIELGKSNELFRIIYDCKGRFC 124
Query: 403 IHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIM 582
+H I +EA +KL +V + G K +P++VTHDGRTI Y DP ++V+D+++ +I T ++
Sbjct: 125 VHHIEAKEASFKLLRVNQFKIGAKGIPHVVTHDGRTISYVDPSVRVHDALKFNIKTGEVE 184
Query: 583 DFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSSXXVXI 702
IKF+ G++ M+T G N+GRVGTI E+ S V +
Sbjct: 185 SVIKFKVGDVAMVTAGGNVGRVGTIQKIEKQMASFDIVHL 224
>UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9;
Eukaryota|Rep: 40S ribosomal protein S4 - Leishmania
major
Length = 273
Score = 230 bits (563), Expect = 3e-59
Identities = 110/199 (55%), Positives = 133/199 (66%)
Frame = +1
Query: 88 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 267
KKHLKRL APK WML KL GV+APRP GPHKLRECLPL++ +RNRLKYAL E I+
Sbjct: 3 KKHLKRLYAPKDWMLSKLTGVFAPRPRPGPHKLRECLPLLVIIRNRLKYALNAREGEMIL 62
Query: 268 KQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK 447
+Q L+ VD R D YPAGFMDVV I KT + FRL+YDVKGRF + ++ EA+ KL K
Sbjct: 63 RQGLVHVDNHPRRDGKYPAGFMDVVEIPKTGDRFRLMYDVKGRFALVNLSEAEAQIKLMK 122
Query: 448 VKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITG 627
V + T VP VTHDG IRYPDP + D+I ++ K +D IK G ++TG
Sbjct: 123 VVNLYTATGRVPVAVTHDGHRIRYPDPHTSIGDTIVYNVKEKKCVDLIKNRQGKAVIVTG 182
Query: 628 GRNLGRVGTIVSRERHPGS 684
G N GR+G IV E HPG+
Sbjct: 183 GANRGRIGEIVKVECHPGA 201
>UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing
protein; n=1; Tetrahymena thermophila SB210|Rep:
Ribosomal family S4e containing protein - Tetrahymena
thermophila SB210
Length = 370
Score = 224 bits (548), Expect = 2e-57
Identities = 118/234 (50%), Positives = 149/234 (63%), Gaps = 31/234 (13%)
Frame = +1
Query: 76 ARGPKKHLKRLNAPKAWMLD-------------------------KLGGVY----APRPS 168
ARGPKKHLKR+NAPK+WML+ KL +Y A RPS
Sbjct: 83 ARGPKKHLKRINAPKSWMLNKLGGIWVITFFAFRLRKNDFITTIPKLKFIYFKKQATRPS 142
Query: 169 TGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV--KQRLIKVDGKVRTDPTYPAGFMDVV 342
GPHKLRE LPL + L+ RL YAL G +V I+ K++ + VDGKVR D YP G MDVV
Sbjct: 143 QGPHKLRESLPLSVLLKERLNYALNGRDVTLILNDKEQNVFVDGKVRRDKGYPTGLMDVV 202
Query: 343 SIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYP 522
IEKT++ FR++YD KGRF + ++ EEAKYKL KV A GP +PY+VTHD RTIR+P
Sbjct: 203 RIEKTDQSFRILYDTKGRFVLKSLSKEEAKYKLLKVTAKAIGPNQIPYIVTHDSRTIRFP 262
Query: 523 DPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGS 684
+P IK+ D+++ D+ KI +F ESGN+C I G N+GRVG I E+H GS
Sbjct: 263 NPEIKIGDTLKYDLVNNKIENFAHLESGNVCYIQQGNNIGRVGIIQHIEKHQGS 316
>UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S4 -
Encephalitozoon cuniculi
Length = 268
Score = 170 bits (414), Expect = 4e-41
Identities = 83/195 (42%), Positives = 126/195 (64%)
Frame = +1
Query: 73 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 252
M G + HLKR APK+WMLDK GG +A P++GPHK EC+PL + L+YA E
Sbjct: 1 MPTGHRDHLKRKTAPKSWMLDKQGGTFALMPASGPHKKTECIPLGYLISRFLRYASNFKE 60
Query: 253 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 432
+ I+ ++ IKV+G+VRT+ +P G DVVSIEKT E FR++Y+V +F +HRI+ EEA
Sbjct: 61 LSIILAEKNIKVNGRVRTNSHFPVGLFDVVSIEKTGEHFRVLYNVHKKFHLHRISSEEAS 120
Query: 433 YKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNL 612
Y+L KV + + +PY+V+ G +IR+ DP I + +I++ T+K++++I +
Sbjct: 121 YRLTKVTKKYEN-QGIPYIVSSCGLSIRFCDPAIDLGYTIKISNETSKVIEYIVPGPDKV 179
Query: 613 CMITGGRNLGRVGTI 657
++ G+ GRVG I
Sbjct: 180 IFVSRGKARGRVGVI 194
>UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S4e -
Methanopyrus kandleri
Length = 260
Score = 132 bits (319), Expect = 1e-29
Identities = 79/227 (34%), Positives = 119/227 (52%), Gaps = 16/227 (7%)
Frame = +1
Query: 82 GPKKHLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 258
GPK+H+KRL AP AW + K GG +APRP GPH + +PL+I +R+ L YA E
Sbjct: 7 GPKRHVKRLAAPYAWPIPRKEGGKFAPRPYPGPHTMDTSVPLLILVRDMLGYADYAREAR 66
Query: 259 KIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYK 438
KI+ + I VDG VR +P +P G MDVV I +T + +R++ + R + I+ EEA+ K
Sbjct: 67 KIITRGEIYVDGVVRKEPKFPVGIMDVVEIPRTGDRYRVVMNEHHRLDVVPISEEEARVK 126
Query: 439 LCKVKRVATGPKNVPYLVTHDGRT--IRYPDP------LIKVNDSIQLDI------ATTK 576
+C++K + HDG+ + DP + V DS+ L++ + K
Sbjct: 127 VCRIKNKTYVRGGNLQITMHDGKNWLVEIEDPTDPKEDVYSVGDSLVLELPEPDSGESWK 186
Query: 577 IMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPG-SSXXVXIHNXE 714
++D I FE G GR+ G VG +V + G + + N E
Sbjct: 187 VVDHIPFEEGVWVYAMTGRHSGEVGRVVEIQTFEGPQEDLITVENPE 233
>UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanococcus maripaludis
Length = 244
Score = 130 bits (313), Expect = 6e-29
Identities = 77/222 (34%), Positives = 117/222 (52%), Gaps = 10/222 (4%)
Frame = +1
Query: 79 RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 258
+GP+KHLKRL AP W L + + RPS GPH + + LPL++ +R+ LKYA E
Sbjct: 4 KGPRKHLKRLAAPANWQLPRKVKTFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAK 63
Query: 259 KIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYK 438
KI++ I +DG R + +PAG MDV+SI + +E + +++D GR ++ + ++ K
Sbjct: 64 KIIQTGKILIDGLKRKEYKHPAGLMDVLSIPEMDETYLVLFDESGRISLKK--TDKTDVK 121
Query: 439 LCKV--KRVATGPKNVPYLVTHDGR--------TIRYPDPLIKVNDSIQLDIATTKIMDF 588
LCK+ K V G N+ L HDGR + + + K DS+ + I I
Sbjct: 122 LCKIVNKTVVKG-GNI-QLNLHDGRNQIVKVSDAAKAEEDVYKTGDSVLISIPEQSIAGH 179
Query: 589 IKFESGNLCMITGGRNLGRVGTIVSRERHPGSSXXVXIHNXE 714
+ F G L ITGG+++G IV E S V + N +
Sbjct: 180 VAFGEGKLAYITGGKHVGEFAKIVEVENRALYSDIVTLENKD 221
>UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4;
Desulfurococcales|Rep: 30S ribosomal protein S4e -
Aeropyrum pernix
Length = 253
Score = 128 bits (309), Expect = 2e-28
Identities = 77/210 (36%), Positives = 114/210 (54%), Gaps = 10/210 (4%)
Frame = +1
Query: 73 MAR-GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGN 249
MAR G ++ LK L AP+ W + + +A +P GPH + LPL++ +RN L YA T
Sbjct: 1 MARMGGQRRLKALAAPRFWPILRKEYKWAVKPRPGPHPAEKSLPLLLIVRNVLGYAQTAR 60
Query: 250 EVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLI-YDVKGRFTIHRITPEE 426
E K++ + +VDG VR D +P GFMDV+ + T E FR++ Y VK F +H I EE
Sbjct: 61 EARKLISEGHFRVDGVVRKDYKFPVGFMDVIEVVDTGEKFRMLPYPVK-FFKLHPIPEEE 119
Query: 427 AKYKLCKVKRVATGPKNVPYLVTHDGRTI--RYPDP------LIKVNDSIQLDIATTKIM 582
K +++ T L HDGR I R DP + + D++ + + +I
Sbjct: 120 GDLKPVRIENKTTVKGGHVQLNLHDGRNILVRVKDPRNPVEDVYRTMDTLLITVPGQEIK 179
Query: 583 DFIKFESGNLCMITGGRNLGRVGTIVSRER 672
IKF G + +I GGRN+GRVG + S ++
Sbjct: 180 GHIKFGEGAIAIIVGGRNVGRVGVVKSVQK 209
>UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2;
Methanobacteriaceae|Rep: Ribosomal protein S4e -
Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM
861)
Length = 242
Score = 127 bits (306), Expect = 5e-28
Identities = 64/192 (33%), Positives = 102/192 (53%)
Frame = +1
Query: 82 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLK 261
G +KHLK APK W + + +PS G H + L L + +R+ LK A E +
Sbjct: 5 GSRKHLKTYKAPKTWPIHPKEDTWTVKPSAGSHSIENSLSLTLVIRDILKLADNSREAKR 64
Query: 262 IVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKL 441
I+ + VDG+V D +P GFMD++ I KT E++R++ D KGR +++I EE KL
Sbjct: 65 IINSGNVLVDGRVIKDYKFPVGFMDIIEIPKTGEVYRVLLDKKGRLQLNKI--EENDSKL 122
Query: 442 CKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMI 621
CK+ +T + HDG+ + + V D I L + +I + + + G +I
Sbjct: 123 CKIVNKSTIKGGKIQVNLHDGKNVIIDENDYNVGDVIDLKVPDHEINEVFELKEGACVLI 182
Query: 622 TGGRNLGRVGTI 657
TGG++ G +GT+
Sbjct: 183 TGGKHTGELGTV 194
>UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1;
Thermofilum pendens Hrk 5|Rep: Ribosomal protein S4E,
central - Thermofilum pendens (strain Hrk 5)
Length = 251
Score = 121 bits (292), Expect = 2e-26
Identities = 68/206 (33%), Positives = 105/206 (50%), Gaps = 8/206 (3%)
Frame = +1
Query: 64 LSNMARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALT 243
+ +G +HL+R AP W + + V+ +PS GPH L +P+ I LR+ YA T
Sbjct: 1 MGRKVKGSLRHLRRSVAPPFWPIKRKEYVWTVKPSPGPHSLLSSIPIGIVLRDVFGYAKT 60
Query: 244 GNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPE 423
E +I+ R+I+VDG+V TD +P G MDV+ I + +R++ D + I PE
Sbjct: 61 MKEARRILASRVIEVDGRVVTDYKFPVGLMDVLHIIPEEKYYRVVPDPARKLRFVEIKPE 120
Query: 424 EAKYKLCKVKRVATGPKNVPYLVTHDGRTI-------RYPDPL-IKVNDSIQLDIATTKI 579
EA YKL +++R T HDGR + Y + K D++ + I I
Sbjct: 121 EAGYKLAQIRRKMTVKNGDLQFTLHDGRNVLIRKGSEAYSTAISYKTYDALLITIPRQSI 180
Query: 580 MDFIKFESGNLCMITGGRNLGRVGTI 657
+ + FE G L ++ GRN+G +G I
Sbjct: 181 VSHVPFEVGTLAIVVDGRNVGFMGRI 206
>UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4;
Pyrobaculum|Rep: 30S ribosomal protein S4e - Pyrobaculum
aerophilum
Length = 238
Score = 116 bits (280), Expect = 6e-25
Identities = 71/192 (36%), Positives = 99/192 (51%), Gaps = 4/192 (2%)
Frame = +1
Query: 94 HLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 270
HL+R AP W + K GGV+ RPS GPH L LPL + +R+ LKYA T +E I+
Sbjct: 3 HLRRTLAPAWWPIPRKKGGVWVVRPSPGPHSLAYSLPLALIIRDVLKYAKTMHEARYIIS 62
Query: 271 QRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 450
+ +KVDG VR D +P G MDV+ I T E++R++ D + + I+ EEA KL +V
Sbjct: 63 RGYVKVDGVVRRDYKFPVGLMDVIEIVPTGEVYRVVPDADKYYNLLPISTEEAALKLLRV 122
Query: 451 KRVATGPKNVPYLVTHDGR---TIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMI 621
+ L HDGR T IK DS+ D+ I I + G ++
Sbjct: 123 EGKTMVKGGRIQLHFHDGRNLITTLEAGKQIKTFDSVLYDLRNKAIKAHIPLKLGVNAVV 182
Query: 622 TGGRNLGRVGTI 657
G N+G GT+
Sbjct: 183 IHGSNVGFSGTL 194
>UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein S4E -
Caldivirga maquilingensis IC-167
Length = 237
Score = 112 bits (270), Expect = 1e-23
Identities = 61/193 (31%), Positives = 98/193 (50%), Gaps = 3/193 (1%)
Frame = +1
Query: 94 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 273
HL+R +P+ W +++ G ++ +PS GPH +PL + LR+ YA T E I+ +
Sbjct: 3 HLRRSTSPEWWPVERKGAPWSIKPSPGPHPANSSIPLAVLLRDVFHYAKTLREARLIIGK 62
Query: 274 RLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVK 453
+KVDGKVR D YP G MDV+ + NE +R+I D RI EA K+C+++
Sbjct: 63 GYVKVDGKVRRDYKYPVGLMDVIELTPINEYYRIIPDPVNFLRPIRIDKSEAGVKVCRIE 122
Query: 454 RVATGPKNVPYLVTHDGRTI---RYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMIT 624
L HDGR I + + S+ +++ K+MD+ + +
Sbjct: 123 DKTMVKAGKIQLNLHDGRNIIVDQDEGRKYETLGSVVVNLEDGKLMDYYPMQPNQYVIAF 182
Query: 625 GGRNLGRVGTIVS 663
G N+GR GT+++
Sbjct: 183 NGVNVGRHGTLIN 195
>UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2;
Bigelowiella natans|Rep: 40S ribosomal protein S4 -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 242
Score = 111 bits (267), Expect = 2e-23
Identities = 58/195 (29%), Positives = 100/195 (51%)
Frame = +1
Query: 73 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 252
MA+G KKH KR+++ K G++ + S+GPH + + L+ ++ A E
Sbjct: 1 MAKGIKKHQKRISSNTMIKYKKKLGIFNTKISSGPHSKVKSVSLLNIIKKFFHLADNNQE 60
Query: 253 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 432
K+VK + V+GK +P MD +S N+ +R++ G+ T++ I E
Sbjct: 61 AQKVVKTGFLYVNGKKCLSHKFPISLMDTISFPLANKHYRVLLSKAGKLTVYEINQNEKD 120
Query: 433 YKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNL 612
K+CKV ++ ++T D R ++ IKV DS+ + +I+ +KFE G+L
Sbjct: 121 LKICKVIKIINASSKNKIIITDDLRELKINYAKIKVEDSLLIKTINDEIVYALKFEVGSL 180
Query: 613 CMITGGRNLGRVGTI 657
C+IT G++LG + I
Sbjct: 181 CLITRGKHLGTIAVI 195
>UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3;
Thermoplasma|Rep: 30S ribosomal protein S4e -
Thermoplasma acidophilum
Length = 235
Score = 110 bits (265), Expect = 4e-23
Identities = 65/196 (33%), Positives = 97/196 (49%)
Frame = +1
Query: 100 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 279
KRL + + + + P P+ G H + + L+ +R+ LK + E +I+ L
Sbjct: 6 KRLMVSRQVKIPRKTYFWGPTPNPGMHPKDQSVTLLSIIRDYLKLSDKEREAARILANGL 65
Query: 280 IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRV 459
+KVDGK + + GFMDV+ I E +R++Y+ +G + + T E A KL KV+
Sbjct: 66 VKVDGKTVREKKFAVGFMDVIEIN--GESYRVVYNDQGALVLMKETKERASMKLLKVRSK 123
Query: 460 ATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNL 639
P N L THDGRT D KV D + + KI + IK + GN IT G ++
Sbjct: 124 VIAPGNRIQLGTHDGRTFITDDKSKKVGDVWAVSVPDMKISEIIKMQPGNKAYITAGSHV 183
Query: 640 GRVGTIVSRERHPGSS 687
+ GTI E GSS
Sbjct: 184 NQTGTISKIEAKEGSS 199
>UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanosarcina mazei (Methanosarcina frisia)
Length = 235
Score = 110 bits (264), Expect = 6e-23
Identities = 60/189 (31%), Positives = 95/189 (50%)
Frame = +1
Query: 94 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 273
H KRL+ PK+W + + G + GPH LPL + +R+ LK E +I+ +
Sbjct: 3 HQKRLSVPKSWKVGRKGNKWISTTRPGPHSQARSLPLGLIIRDVLKLVDNNREGKRILSE 62
Query: 274 RLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVK 453
+ VDG R D +P G DV+++ NE +R++ D KGR ++++ E KLC++
Sbjct: 63 GKVLVDGISRKDLRFPVGLFDVITLPLVNEAYRMLQDEKGRLVLYKLN-ETNVNKLCRIN 121
Query: 454 RVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGR 633
T L +DG I + DS+ L I ++ +KFE GNL M+ GG+
Sbjct: 122 NKTTVKGGKIQLNLNDGTNILGSND-YGTKDSLILSIPDKHVVKHLKFEVGNLAMVIGGQ 180
Query: 634 NLGRVGTIV 660
+ G G I+
Sbjct: 181 HSGETGKIM 189
>UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2;
Euryarchaeota|Rep: 30S ribosomal protein S4E -
Uncultured methanogenic archaeon RC-I
Length = 234
Score = 108 bits (260), Expect = 2e-22
Identities = 60/188 (31%), Positives = 95/188 (50%)
Frame = +1
Query: 94 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 273
HLKR+ AP+ W + + + +P G H +PLV+ LR+ LK A +E+ KI+ +
Sbjct: 5 HLKRVAAPRTWPITRKTSKWVAKPMPGAHSEERGMPLVVVLRDLLKVADNTSEIKKILHE 64
Query: 274 RLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVK 453
+ VDGKVR D Y G D +SI N +R++ + G+F H + +A K+CK+
Sbjct: 65 GKVLVDGKVRKDYRYTVGMFDTISIPAINANYRVVIGMDGKF--HLVPVTDASAKICKIV 122
Query: 454 RVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGR 633
L HDG T+ + K DS+ L + KI + G+L M+T G+
Sbjct: 123 NKTALRGGKIQLNLHDGTTMIASND-YKTKDSVILKMPERKIDQHFTYAVGSLVMVTEGK 181
Query: 634 NLGRVGTI 657
+ G +G +
Sbjct: 182 HSGEIGKV 189
>UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1;
Methanococcoides burtonii DSM 6242|Rep: Ribosomal
protein S4E - Methanococcoides burtonii (strain DSM
6242)
Length = 236
Score = 105 bits (253), Expect = 1e-21
Identities = 57/188 (30%), Positives = 95/188 (50%)
Frame = +1
Query: 94 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 273
H KR++ PK+W + K + GPH + +PL + LR+ L E +++ +
Sbjct: 4 HQKRISVPKSWQISKKSNKWITSTRPGPHNRLQSIPLAVILRDMLGVVDNRAEAKRVLSE 63
Query: 274 RLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVK 453
+ VDG R D +P G MD+++I N +R++ D K R ++++ A KLC+++
Sbjct: 64 GNVLVDGVARKDLRFPVGLMDIITIPLNNVEYRVMLDGKSRLVLNKLDGTGAD-KLCRIE 122
Query: 454 RVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGR 633
+ + + +DG I DSI L + K++ IK+E GNL MI GG
Sbjct: 123 GKTSIKEGKIQMRLNDGVNI-IGSNNYNTKDSIILSVPDKKVVKHIKYEVGNLAMIVGGS 181
Query: 634 NLGRVGTI 657
+ G VG+I
Sbjct: 182 HAGEVGSI 189
>UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmental
samples|Rep: Ribosomal protein S4 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 232
Score = 105 bits (251), Expect = 2e-21
Identities = 58/193 (30%), Positives = 96/193 (49%), Gaps = 1/193 (0%)
Frame = +1
Query: 94 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 273
H+KRL P++W L + ++ +P+ G H C+PL + LR+ L A E +++
Sbjct: 5 HMKRLTMPRSWPLTRKTDIWVQKPNPGGHSDEMCMPLGVILRDVLDLAHNLREAKRMLAT 64
Query: 274 RLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVK 453
R + VDG++ TD G MDV+++ + + FR I DV G+ I+ + A KLC+V
Sbjct: 65 RQVLVDGRIETDLGRGVGLMDVLTVGE--DSFRCILDVNGKLRYRSISDKAAASKLCRVM 122
Query: 454 RVATGPKNVPYLVTHDGRTIRYPD-PLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGG 630
+T + HDGR I D L D++ + + + F G +TGG
Sbjct: 123 GKSTITDGKTQIHLHDGRNILVSDAKLYDSGDTLVISLPDQSVAGHHPFSKGATAYLTGG 182
Query: 631 RNLGRVGTIVSRE 669
++G +VSR+
Sbjct: 183 SHIGITAKVVSRD 195
>UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3;
Methanomicrobiales|Rep: Ribosomal protein S4E, central -
Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498
/ JR1)
Length = 242
Score = 105 bits (251), Expect = 2e-21
Identities = 65/195 (33%), Positives = 98/195 (50%), Gaps = 5/195 (2%)
Frame = +1
Query: 91 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 270
K+LKRL AP +W + K + + + GPH LP+ ++LR + A +EV KI+
Sbjct: 3 KYLKRLVAPGSWHIPKKVQKFVMKTAPGPHNAG-ALPVGVWLREHIGLAQNASEVKKILH 61
Query: 271 QRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 450
QR + V+G+ D G D+VSI K + +R+ DVKG I E AK +LCK+
Sbjct: 62 QRDVLVNGRACKDSRMGLGVFDIVSIPKLGKHYRIQLDVKGNLVAIEIPAESAKTRLCKI 121
Query: 451 KRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATT-----KIMDFIKFESGNLC 615
+ T L G + D K DS+ + + T +I+D + GN+
Sbjct: 122 RNKTTVKGGKVQLNFAFGANV-LADNTYKAKDSVVVTLGTDGEDRFRIVDHFPYAEGNVA 180
Query: 616 MITGGRNLGRVGTIV 660
MI GG++ G+VG IV
Sbjct: 181 MIVGGKHSGKVGRIV 195
>UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S4e -
Nanoarchaeum equitans
Length = 234
Score = 104 bits (249), Expect = 4e-21
Identities = 60/192 (31%), Positives = 99/192 (51%), Gaps = 2/192 (1%)
Frame = +1
Query: 88 KKHLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKI 264
K+HL+ L P+ W + K G + +PS GPH +P+ ++LR+ L A EV +
Sbjct: 6 KRHLRSLAVPRTWPVPRKSRGYWIVKPSPGPHSKEFAMPIAVWLRDYLGLAENMREVRYL 65
Query: 265 VKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLC 444
+ + VDG+ D +P G DV++I + NE +R++ D +G+ + +I EEA K
Sbjct: 66 LNNGKVLVDGRPIKDYKFPVGLFDVLAIPEINEYYRVLLDERGKLYLKKIDKEEANIKYG 125
Query: 445 K-VKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMI 621
K +++V+ + Y +T DGRT D K + + +I KI + I E I
Sbjct: 126 KIIRKVSVRGGKIQYTLT-DGRTF-LGDNSYKTHYGVVYEIPNFKIREVIPLEKDRKAYI 183
Query: 622 TGGRNLGRVGTI 657
G++ GR+G I
Sbjct: 184 IRGKHTGRIGVI 195
>UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_03001139;
n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
protein Faci_03001139 - Ferroplasma acidarmanus fer1
Length = 241
Score = 101 bits (241), Expect = 3e-20
Identities = 58/191 (30%), Positives = 98/191 (51%), Gaps = 1/191 (0%)
Frame = +1
Query: 100 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 279
K + A + + + ++ P+ H + +P++I LR+ LK E+ +I+ +
Sbjct: 7 KIMMASRKLKIPRKTNFWSVTPTPATHSKEDSIPMLIALRDYLKLGDKEREITRILNNNM 66
Query: 280 IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK-VKR 456
+KVDG++ D +P GFMDV+SI+ + ++YD KG+ I + P KL K VK+
Sbjct: 67 VKVDGRIVKDRRFPVGFMDVLSIDTLENDYIIVYDRKGKLVIRQNAPGNKGLKLFKVVKK 126
Query: 457 VATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRN 636
G + L HDG+TI I +D + + I +I + +K G+ ITGG +
Sbjct: 127 TIIGTGKI-QLGFHDGKTIVTDRKDINTSDVLLMKIPDLEIENVLKIAEGDKVFITGGSH 185
Query: 637 LGRVGTIVSRE 669
+G + TI S E
Sbjct: 186 VGELATIKSIE 196
>UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5;
Sulfolobaceae|Rep: 30S ribosomal protein S4e -
Sulfolobus acidocaldarius
Length = 244
Score = 97.9 bits (233), Expect = 3e-19
Identities = 66/193 (34%), Positives = 91/193 (47%), Gaps = 5/193 (2%)
Frame = +1
Query: 94 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 273
H+ R AP + K + R GPHK++E +PL I L+ LK T E +I+
Sbjct: 3 HITRFEAPWFLKVGKKEYKWIIRSRAGPHKIQESVPLAILLKYYLKAVDTTREAKRIIFD 62
Query: 274 RLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVK 453
+ VDGKVR D YP G MDVV I + R+I D T I+ E+AKYK ++
Sbjct: 63 GKVLVDGKVRRDYKYPVGLMDVVEIPSADLRVRIIPDNVRYLTTINISREDAKYKFVRIM 122
Query: 454 RVATGPKNVPYLVTHDGRTIRYP-DPLIKVN----DSIQLDIATTKIMDFIKFESGNLCM 618
T V L DGR I + L + N ++++++ KI + G M
Sbjct: 123 NKTTLKSGVLQLNLEDGRNILLKGEELSQYNLPTLTTLKIELPEQKITTAYTIKEGVYAM 182
Query: 619 ITGGRNLGRVGTI 657
I GGRN G G I
Sbjct: 183 IIGGRNAGLHGKI 195
>UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1;
Picrophilus torridus|Rep: 30S ribosomal protein S4e -
Picrophilus torridus
Length = 234
Score = 89.8 bits (213), Expect = 8e-17
Identities = 61/190 (32%), Positives = 91/190 (47%)
Frame = +1
Query: 100 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 279
K + AP+ + + +A G HK +PL+I LR+ LK E+ +I+ L
Sbjct: 6 KIMMAPRKLKIARKSRFWAVNSLPGSHKKDSSIPLLIALRDYLKLGDKEREITRILTNSL 65
Query: 280 IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRV 459
+ VDGKV + GFMD +++ + L + YD KG+ I E KL +VK
Sbjct: 66 VMVDGKVVKERRRGIGFMDTLTVSGNDYL--VSYDRKGKLVILPKPGETKGLKLLRVKGK 123
Query: 460 ATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNL 639
+ HDG T+ IK DS+ + I +I+D +KF GN ITGG ++
Sbjct: 124 TYVKGGRIQISFHDGSTMVTDRKDIKNGDSVLVKIPKKEIVDVLKFAPGNRVFITGGSHV 183
Query: 640 GRVGTIVSRE 669
G + TI S E
Sbjct: 184 GEIATIKSIE 193
>UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6;
Halobacteriaceae|Rep: 30S ribosomal protein S4E -
Haloarcula marismortui (Halobacterium marismortui)
Length = 234
Score = 86.2 bits (204), Expect = 1e-15
Identities = 54/199 (27%), Positives = 90/199 (45%), Gaps = 1/199 (0%)
Frame = +1
Query: 94 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 273
H KRL+ P +W +++ + + GPH +PL+I LR+ L YA E + +
Sbjct: 4 HQKRLSVPNSWPVERKTATFTVKAGAGPHG-ESGVPLLIVLRDVLGYADNRKEARYALNE 62
Query: 274 RLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVK 453
+ ++GK +D P G D+++ + E +R+ GR + I P+ A+ KL K+
Sbjct: 63 DNVLINGKAISDEERPVGMFDILAFTEREEYYRVFPGEGGRLALTAIDPDAAQSKLGKIV 122
Query: 454 RVATGPKNVPYLVTHDGRT-IRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGG 630
L HDG T I D DSI + +++ ++E G L G
Sbjct: 123 TKTHVSGGDVQLGLHDGETLIVEDDQTYDAGDSIVVGNEDGEVVAHFEYEEGALVTAVDG 182
Query: 631 RNLGRVGTIVSRERHPGSS 687
+ G VG + + PGS+
Sbjct: 183 AHAGEVGEVEEIQVTPGSA 201
>UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1;
Methanocorpusculum labreanum Z|Rep: Ribosomal protein
S4E, central - Methanocorpusculum labreanum (strain ATCC
43576 / DSM 4855 / Z)
Length = 239
Score = 84.6 bits (200), Expect = 3e-15
Identities = 53/190 (27%), Positives = 91/190 (47%), Gaps = 3/190 (1%)
Frame = +1
Query: 100 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 279
KR+ AP AW + + Y S+GPH LP+ I+LR+ +++AL EV KI+ R
Sbjct: 5 KRMTAPDAWQIARKESKYVVSTSSGPHD-GSALPIGIWLRDHMQFALNTKEVRKILHDRQ 63
Query: 280 IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRV 459
+ ++G + TD D++S K ++ + ++ D KGR + I+ + AK +L KV
Sbjct: 64 VLLNGHIVTDEHIGIDVFDIISFPKIDKHYMILVDEKGRHNEYEISADAAKLQLVKVANK 123
Query: 460 ATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIA---TTKIMDFIKFESGNLCMITGG 630
T + G + K DS+ + IA + + GN+ +I GG
Sbjct: 124 TTIKGGKTQINLTSGANF-IGEENCKGKDSLVIGIAGDDRFAVQQHFPYAVGNMAIIIGG 182
Query: 631 RNLGRVGTIV 660
++ + G +V
Sbjct: 183 QHTMKTGKLV 192
>UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2;
Thermoprotei|Rep: Ribosomal protein S4E - Cenarchaeum
symbiosum
Length = 238
Score = 84.2 bits (199), Expect = 4e-15
Identities = 53/189 (28%), Positives = 83/189 (43%)
Frame = +1
Query: 91 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 270
K LKR AP W + + G + G H +P + LR+ L T E K +
Sbjct: 8 KKLKRQMAPSFWGITRKGKRFVVTVHPGAHSKHRSIPSAVLLRDTLGAVSTLREAKKSIY 67
Query: 271 QRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 450
++VDG RT + G MDVV + T +++R++ +I E K+C+V
Sbjct: 68 SGNVEVDGVKRTSLHHGIGLMDVVELGGTGDIYRMVPSGGAILKPVKIEAAEKDRKICRV 127
Query: 451 KRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGG 630
+ + HDGR++ D + V DS + + KI+ + E G ++T G
Sbjct: 128 TSKTSISGGRTQIGFHDGRSL-ISDEKVSVGDSCLVQVPGQKILKVARMEKGAHAVVTRG 186
Query: 631 RNLGRVGTI 657
N G GTI
Sbjct: 187 TNAGSTGTI 195
>UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 17 contig 1, DNA
sequence - Ostreococcus tauri
Length = 197
Score = 48.4 bits (110), Expect = 3e-04
Identities = 32/112 (28%), Positives = 55/112 (49%)
Frame = -3
Query: 669 LAGHDGAHTPQVTASRDHTQVPGLKLDEVHNLRSCNV*LDGIVDFDKWVWIADGAAIMRY 490
LA D V + DH Q ++LD + +L +V +G+ D + + +GAA+++
Sbjct: 82 LAALDHPDATGVVTTGDHAQSADVELDRIGDLVRRDVDHNGVTLLDHGIRVTNGAAVVQT 141
Query: 489 QVRNILRSGRHTLDFTQLVLSLLRGDTVDCESALNIID*TKQFISLLN*DNI 334
R+ L QLVL D V ES+L ++D + FI+L + D++
Sbjct: 142 DARHALVPELLAPHLAQLVLRFDSLDAVHNESSLGVVDEPEVFIALFDGDDV 193
>UniRef50_A0BHK0 Cluster: Chromosome undetermined scaffold_108,
whole genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_108,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 246
Score = 40.3 bits (90), Expect = 0.068
Identities = 25/76 (32%), Positives = 42/76 (55%)
Frame = +1
Query: 166 STGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVS 345
+T P +L + + L + ++ K L E L I KQ+ +KV+ K + DPT+P D S
Sbjct: 100 NTQPRELLKVVNLDPKIMDKEKKKL--EEELDINKQQKVKVEHKKQLDPTFPRNDFDKFS 157
Query: 346 IEKTNELFRLIYDVKG 393
IE +++ L+ + KG
Sbjct: 158 IEDMDQVLNLLSNYKG 173
>UniRef50_UPI000038E364 Cluster: hypothetical protein Faci_03000514;
n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
protein Faci_03000514 - Ferroplasma acidarmanus fer1
Length = 317
Score = 37.5 bits (83), Expect = 0.48
Identities = 21/63 (33%), Positives = 32/63 (50%)
Frame = -3
Query: 366 QFISLLN*DNIHKSSRISRVSPNFPINLYEALFHNFQDFVSGQSILQTIPQENHQGQALA 187
Q I+ N +NI + I + N P E LFH F DFVSG ++ I + + + +A
Sbjct: 50 QVINTYNDENILEIINIPDIKYNIPDAEKEILFHKFIDFVSGNKLISGIMKIMYLDRKIA 109
Query: 186 QLV 178
Q +
Sbjct: 110 QFI 112
>UniRef50_Q7U147 Cluster: PROBABLE OXIDASE; n=7; Mycobacterium
tuberculosis complex|Rep: PROBABLE OXIDASE -
Mycobacterium bovis
Length = 504
Score = 35.1 bits (77), Expect = 2.6
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = -2
Query: 205 PGASTRATCGDRLTVSVHTHRQVCPTSMLWERLSASNAS*GLAPCWTSI 59
PG RAT GD + VSV T+R PTS+ W ++ N G P +I
Sbjct: 93 PGPLIRATVGDEIVVSV-TNRLGDPTSVHWHGIALRNDMDGTEPATANI 140
>UniRef50_A5BNN8 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 906
Score = 34.7 bits (76), Expect = 3.4
Identities = 32/103 (31%), Positives = 44/103 (42%)
Frame = -1
Query: 632 RPPVIIHKFPDSNLMKSIIFVVAMSNWMESLTLISGSG*RMVRPSCVTKYGTFLGPVATR 453
RPP H SN + S + A S +S+TLI +R T TF+ VA
Sbjct: 298 RPPRTAHIAQSSNPLLSRLDSTASST-SQSITLIGSDYDAYLRYQAATS--TFVASVAQT 354
Query: 452 LTLHNLYLASSGVIRWIVNLPLTS*IRRNSSLVFSIETTSINP 324
+ + SS + WI++ + I N L SI TTS P
Sbjct: 355 DNVSVCFTQSSSLGPWILDSGASDHISGNKHLFSSITTTSALP 397
>UniRef50_A6GEF6 Cluster: Hydrolase, alpha/beta fold family protein;
n=1; Plesiocystis pacifica SIR-1|Rep: Hydrolase,
alpha/beta fold family protein - Plesiocystis pacifica
SIR-1
Length = 310
Score = 33.9 bits (74), Expect = 5.9
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Frame = +1
Query: 124 WMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVR 303
W +D LGG+ K+R LP+ +F ++ G V +V + ++ G R
Sbjct: 216 WWVDFLGGLIELGDDAKLRKIRADLPIYVFAGDQDPVGAQGKNVRALVDR--LRATGHAR 273
Query: 304 TDPT-YPAGFMDVVSIEKTNELFRLIYDVKG 393
T YP G ++++ + +++ R + D G
Sbjct: 274 VKQTLYPGGRHEMINERERDQVTRELIDWLG 304
>UniRef50_A6E8K7 Cluster: Putative uncharacterized protein; n=1;
Pedobacter sp. BAL39|Rep: Putative uncharacterized
protein - Pedobacter sp. BAL39
Length = 195
Score = 33.5 bits (73), Expect = 7.8
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Frame = -1
Query: 260 FRTSFPVKAYFRRFLRKITRGKHSRNLWGPVDGLGAYTPPSLSNIHALGAFKRFK---CF 90
F F KA FR+ +RK+ G+H+ +D A+T PSL H KR++ F
Sbjct: 11 FLGRFFFKARFRKLIRKL--GRHTEVYLVDIDNTLAHTWPSLQQRHYSAENKRYRSLPIF 68
Query: 89 LGPRAML 69
+G R+ L
Sbjct: 69 IGMRSYL 75
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 750,567,286
Number of Sequences: 1657284
Number of extensions: 15926756
Number of successful extensions: 43752
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 42081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43721
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 84851082477
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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