Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_M23
         (927 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.06 |||cargo receptor for soluble proteins |Schizosacchar...    70   4e-13
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ...    28   2.1  
SPAC24H6.12c |uba3||NEDD8 activating enzyme|Schizosaccharomyces ...    27   3.8  
SPBC19F8.06c |meu22||amino acid permease, unknown 11|Schizosacch...    26   6.6  

>SPCC970.06 |||cargo receptor for soluble proteins
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 302

 Score = 70.1 bits (164), Expect = 4e-13
 Identities = 29/48 (60%), Positives = 37/48 (77%)
 Frame = +3

Query: 111 NAWWAVPSYKPLRDFLKYDFFQTLSVIGGLLMIVYLGPGGVSMDEHKK 254
           N++W+VP   P RDF +YDFFQTLS++GGLL +V  GPG  S+DE KK
Sbjct: 253 NSFWSVPRESPYRDFYRYDFFQTLSIVGGLLYLVNTGPGKFSVDEKKK 300


>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
           factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
 Frame = +2

Query: 47  PGRSLSCSD-ACPRTDSSQSVP*RVVGGAILQTAQRLPQI*LLPDIVSDRRPAYDSLPRA 223
           PG S +CS+ + P        P + +      T+       L P+  S ++   D+    
Sbjct: 397 PGSSTTCSNLSSPHIKRKSRSPPQSLPSTPFPTSSSSTNGTLEPNANSPKKNEQDAWIAK 456

Query: 224 GRRQYGRTQEEMVELSQRRRTT 289
            RRQ   T EEM  L++R R T
Sbjct: 457 KRRQQRYTTEEMRALAKRFRET 478


>SPAC24H6.12c |uba3||NEDD8 activating enzyme|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 444

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -2

Query: 479 DINLCLTERNLKLLTSEQITLREC 408
           D+NL +T++NL   TS  + LREC
Sbjct: 423 DVNLVITDKNLS--TSLSVQLREC 444


>SPBC19F8.06c |meu22||amino acid permease, unknown
           11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +3

Query: 120 WAVPSYKPLRDFLKYDFFQTLSVIGGLLMIVYLGPGGVSMDE 245
           W    Y  +  FL     + +SVIG +++ + +  GGV  D+
Sbjct: 192 WGTEGYGEVEFFLS--IMKVISVIGFVILSIIIAAGGVPTDD 231


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,351,870
Number of Sequences: 5004
Number of extensions: 68852
Number of successful extensions: 131
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)