Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_M22
         (907 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa...    30   0.52 
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    26   6.4  
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ...    26   8.5  
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G...    26   8.5  

>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
           Msa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 29.9 bits (64), Expect = 0.52
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = -1

Query: 385 LCVTRTTLSRSDEEAITVVKDEFRSITSLARSSLFSPYTVAPSSFVRF 242
           L V     SRS+EE    VKD F+    L    +   +   P SFV+F
Sbjct: 81  LFVASLNSSRSEEELTATVKDYFQQWGPLLHVKVLKDWLQRPYSFVQF 128


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 344 SYHRGEGRVQVHY*LSPFFAVQSIHSSAFILRE 246
           SY+  EG+V  HY  S  FA +       ILR+
Sbjct: 218 SYYEYEGKVYCHYHYSTLFAARCCGCDGPILRQ 250


>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 4/32 (12%)
 Frame = +3

Query: 366 VVRVTQRGFTLVVVNRIHALFG----YDVVSH 449
           ++++   G  LVV+NR+ + FG    YDVV +
Sbjct: 817 IIKLENLGIRLVVLNRVRSRFGLYLYYDVVKN 848


>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
           Gde1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1076

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +3

Query: 282 NSEERA-KLVMDLNSSFTTVIASSSDLERVVRVTQRGFTLVVVN 410
           +SE R+ K  MDL  S + VI   SDL   +RV+ +G   V V+
Sbjct: 475 SSEMRSRKRAMDLQLSRSVVIIRISDLAGRIRVSLQGDDAVYVS 518


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,676,105
Number of Sequences: 5004
Number of extensions: 46562
Number of successful extensions: 107
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)