Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_M22
         (907 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1355 - 29522847-29523494                                         30   2.9  
12_01_0400 + 3169597-3170504,3170510-3171269                           28   8.9  

>06_03_1355 - 29522847-29523494
          Length = 215

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
 Frame = +3

Query: 186 LIYKIRMPYIMVMGSLRMPNLTKDEGATVYGLNSEERAKLVMDLNSSFTTVIASSSDLER 365
           LIYK RMPY +V+   ++  L  D+G T+  L   E    VM  N++ +   AS + ++ 
Sbjct: 53  LIYKPRMPY-LVVSDAQLVRLDYDQGGTIDYL---EALVTVMARNTN-SRADASFARVDL 107

Query: 366 VVR------VTQRGFTLVVVNRIHALFGYDVVSHAMAM 461
            +R         R    VV +   A   YDVVS   A+
Sbjct: 108 ALRFHGADVARLRAAPFVVASASAAPLRYDVVSKGRAL 145


>12_01_0400 + 3169597-3170504,3170510-3171269
          Length = 555

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 16/53 (30%), Positives = 23/53 (43%)
 Frame = +2

Query: 314 PELVLHHGDSFLVGSGESRSSDTKRFHFSRSESYSRSIRLRRCVPRDGDDQRE 472
           P  + H  D    G+G  R++D +R+    +ES     R       DGDD  E
Sbjct: 309 PPPLFHLTDVITSGAGTPRTADARRWLSEFAESLHLPFRYTSLHVHDGDDDDE 361


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,920,810
Number of Sequences: 37544
Number of extensions: 293908
Number of successful extensions: 589
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)